Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d2za_PU0_1-18
CI=0.10


[19-67]:
1d2za_PU0_19-67
CI=1.77


[68-102 ]:
1d2za_PU0_68-102
CI=0.92


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-18]:
1d2za_PU_1-18
CI=0.10


[19-37]:
1d2za_PU_19-37
CI=0.10


[38-67]:
1d2za_PU_38-67
CI=0.80


[68-102 ]:
1d2za_PU_68-102
CI=0.92