Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-82]:
1d3ga_PU0_1-82
CI=1.66


[83-299]:
1d3ga_PU0_83-299
CI=4.38


[300-360 ]:
1d3ga_PU0_300-360
CI=2.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-40]:
1d3ga_PU1_1-40
CI=0.57


[41-59]:
1d3ga_PU1_41-59
CI=1.67


[60-82]:
1d3ga_PU1_60-82
CI=0.50


[83-299]:
1d3ga_PU1_83-299
CI=4.38


[300-360 ]:
1d3ga_PU1_300-360
CI=2.29


Level 2
PU
Molecule needs Java 1.4 Structure


[1-40]:
1d3ga_PU2_1-40
CI=0.57


[41-59]:
1d3ga_PU2_41-59
CI=1.67


[60-82]:
1d3ga_PU2_60-82
CI=0.50


[83-215]:
1d3ga_PU2_83-215
CI=3.50


[216-299]:
1d3ga_PU2_216-299
CI=3.20


[300-360 ]:
1d3ga_PU2_300-360
CI=2.29


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1d3ga_PU3_1-40
CI=0.57


[41-59]:
1d3ga_PU3_41-59
CI=1.67


[60-82]:
1d3ga_PU3_60-82
CI=0.50


[83-98]:
1d3ga_PU3_83-98
CI=0.00


[99-114]:
1d3ga_PU3_99-114
CI=1.74


[115-215]:
1d3ga_PU3_115-215
CI=2.45


[216-299]:
1d3ga_PU3_216-299
CI=3.20


[300-360 ]:
1d3ga_PU3_300-360
CI=2.29


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1d3ga_PU4_1-40
CI=0.57


[41-59]:
1d3ga_PU4_41-59
CI=1.67


[60-82]:
1d3ga_PU4_60-82
CI=0.50


[83-98]:
1d3ga_PU4_83-98
CI=0.00


[99-114]:
1d3ga_PU4_99-114
CI=1.74


[115-145]:
1d3ga_PU4_115-145
CI=0.12


[146-215]:
1d3ga_PU4_146-215
CI=2.72


[216-299]:
1d3ga_PU4_216-299
CI=3.20


[300-360 ]:
1d3ga_PU4_300-360
CI=2.29


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1d3ga_PU5_1-40
CI=0.57


[41-59]:
1d3ga_PU5_41-59
CI=1.67


[60-82]:
1d3ga_PU5_60-82
CI=0.50


[83-98]:
1d3ga_PU5_83-98
CI=0.00


[99-114]:
1d3ga_PU5_99-114
CI=1.74


[115-145]:
1d3ga_PU5_115-145
CI=0.12


[146-215]:
1d3ga_PU5_146-215
CI=2.72


[216-250]:
1d3ga_PU5_216-250
CI=1.87


[251-267]:
1d3ga_PU5_251-267
CI=0.32


[268-299]:
1d3ga_PU5_268-299
CI=1.30


[300-360 ]:
1d3ga_PU5_300-360
CI=2.29


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1d3ga_PU6_1-20
CI=0.18


[21-40]:
1d3ga_PU6_21-40
CI=0.09


[41-59]:
1d3ga_PU6_41-59
CI=1.67


[60-82]:
1d3ga_PU6_60-82
CI=0.50


[83-98]:
1d3ga_PU6_83-98
CI=0.00


[99-114]:
1d3ga_PU6_99-114
CI=1.74


[115-145]:
1d3ga_PU6_115-145
CI=0.12


[146-215]:
1d3ga_PU6_146-215
CI=2.72


[216-250]:
1d3ga_PU6_216-250
CI=1.87


[251-267]:
1d3ga_PU6_251-267
CI=0.32


[268-299]:
1d3ga_PU6_268-299
CI=1.30


[300-360 ]:
1d3ga_PU6_300-360
CI=2.29


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1d3ga_PU7_1-20
CI=0.18


[21-40]:
1d3ga_PU7_21-40
CI=0.09


[41-59]:
1d3ga_PU7_41-59
CI=1.67


[60-82]:
1d3ga_PU7_60-82
CI=0.50


[83-98]:
1d3ga_PU7_83-98
CI=0.00


[99-114]:
1d3ga_PU7_99-114
CI=1.74


[115-145]:
1d3ga_PU7_115-145
CI=0.12


[146-215]:
1d3ga_PU7_146-215
CI=2.72


[216-250]:
1d3ga_PU7_216-250
CI=1.87


[251-267]:
1d3ga_PU7_251-267
CI=0.32


[268-299]:
1d3ga_PU7_268-299
CI=1.30


[300-316]:
1d3ga_PU7_300-316
CI=0.22


[317-332]:
1d3ga_PU7_317-332
CI=0.23


[333-360 ]:
1d3ga_PU7_333-360
CI=0.60


Level 8
PU
Molecule needs Java 1.4 Structure


[1-20]:
1d3ga_PU8_1-20
CI=0.18


[21-40]:
1d3ga_PU8_21-40
CI=0.09


[41-59]:
1d3ga_PU8_41-59
CI=1.67


[60-82]:
1d3ga_PU8_60-82
CI=0.50


[83-98]:
1d3ga_PU8_83-98
CI=0.00


[99-114]:
1d3ga_PU8_99-114
CI=1.74


[115-145]:
1d3ga_PU8_115-145
CI=0.12


[146-189]:
1d3ga_PU8_146-189
CI=2.35


[190-215]:
1d3ga_PU8_190-215
CI=0.22


[216-250]:
1d3ga_PU8_216-250
CI=1.87


[251-267]:
1d3ga_PU8_251-267
CI=0.32


[268-299]:
1d3ga_PU8_268-299
CI=1.30


[300-316]:
1d3ga_PU8_300-316
CI=0.22


[317-332]:
1d3ga_PU8_317-332
CI=0.23


[333-360 ]:
1d3ga_PU8_333-360
CI=0.60


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-20]:
1d3ga_PU_1-20
CI=0.18


[21-40]:
1d3ga_PU_21-40
CI=0.09


[41-59]:
1d3ga_PU_41-59
CI=1.67


[60-82]:
1d3ga_PU_60-82
CI=0.50


[83-98]:
1d3ga_PU_83-98
CI=0.00


[99-114]:
1d3ga_PU_99-114
CI=1.74


[115-145]:
1d3ga_PU_115-145
CI=0.12


[146-173]:
1d3ga_PU_146-173
CI=0.93


[174-189]:
1d3ga_PU_174-189
CI=0.46


[190-215]:
1d3ga_PU_190-215
CI=0.22


[216-250]:
1d3ga_PU_216-250
CI=1.87


[251-267]:
1d3ga_PU_251-267
CI=0.32


[268-299]:
1d3ga_PU_268-299
CI=1.30


[300-316]:
1d3ga_PU_300-316
CI=0.22


[317-332]:
1d3ga_PU_317-332
CI=0.23


[333-360 ]:
1d3ga_PU_333-360
CI=0.60