Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-111]:
1d3va_PU0_1-111
CI=3.48


[112-220]:
1d3va_PU0_112-220
CI=2.72


[221-308 ]:
1d3va_PU0_221-308
CI=3.39


Level 1
PU
Molecule needs Java 1.4 Structure


[1-50]:
1d3va_PU1_1-50
CI=2.19


[51-70]:
1d3va_PU1_51-70
CI=1.66


[71-111]:
1d3va_PU1_71-111
CI=2.48


[112-220]:
1d3va_PU1_112-220
CI=2.72


[221-308 ]:
1d3va_PU1_221-308
CI=3.39


Level 2
PU
Molecule needs Java 1.4 Structure


[1-50]:
1d3va_PU2_1-50
CI=2.19


[51-70]:
1d3va_PU2_51-70
CI=1.66


[71-111]:
1d3va_PU2_71-111
CI=2.48


[112-194]:
1d3va_PU2_112-194
CI=3.10


[195-220]:
1d3va_PU2_195-220
CI=0.21


[221-308 ]:
1d3va_PU2_221-308
CI=3.39


Level 3
PU
Molecule needs Java 1.4 Structure


[1-50]:
1d3va_PU3_1-50
CI=2.19


[51-70]:
1d3va_PU3_51-70
CI=1.66


[71-111]:
1d3va_PU3_71-111
CI=2.48


[112-137]:
1d3va_PU3_112-137
CI=0.50


[138-164]:
1d3va_PU3_138-164
CI=1.53


[165-194]:
1d3va_PU3_165-194
CI=1.33


[195-220]:
1d3va_PU3_195-220
CI=0.21


[221-308 ]:
1d3va_PU3_221-308
CI=3.39


Level 4
PU
Molecule needs Java 1.4 Structure


[1-50]:
1d3va_PU4_1-50
CI=2.19


[51-70]:
1d3va_PU4_51-70
CI=1.66


[71-111]:
1d3va_PU4_71-111
CI=2.48


[112-137]:
1d3va_PU4_112-137
CI=0.50


[138-164]:
1d3va_PU4_138-164
CI=1.53


[165-194]:
1d3va_PU4_165-194
CI=1.33


[195-220]:
1d3va_PU4_195-220
CI=0.21


[221-291]:
1d3va_PU4_221-291
CI=3.39


[292-308 ]:
1d3va_PU4_292-308
CI=0.31


Level 5
PU
Molecule needs Java 1.4 Structure


[1-50]:
1d3va_PU5_1-50
CI=2.19


[51-70]:
1d3va_PU5_51-70
CI=1.66


[71-111]:
1d3va_PU5_71-111
CI=2.48


[112-137]:
1d3va_PU5_112-137
CI=0.50


[138-164]:
1d3va_PU5_138-164
CI=1.53


[165-194]:
1d3va_PU5_165-194
CI=1.33


[195-220]:
1d3va_PU5_195-220
CI=0.21


[221-246]:
1d3va_PU5_221-246
CI=1.73


[247-263]:
1d3va_PU5_247-263
CI=0.00


[264-291]:
1d3va_PU5_264-291
CI=0.93


[292-308 ]:
1d3va_PU5_292-308
CI=0.31


Level 6
PU
Molecule needs Java 1.4 Structure


[1-25]:
1d3va_PU6_1-25
CI=1.35


[26-50]:
1d3va_PU6_26-50
CI=0.37


[51-70]:
1d3va_PU6_51-70
CI=1.66


[71-111]:
1d3va_PU6_71-111
CI=2.48


[112-137]:
1d3va_PU6_112-137
CI=0.50


[138-164]:
1d3va_PU6_138-164
CI=1.53


[165-194]:
1d3va_PU6_165-194
CI=1.33


[195-220]:
1d3va_PU6_195-220
CI=0.21


[221-246]:
1d3va_PU6_221-246
CI=1.73


[247-263]:
1d3va_PU6_247-263
CI=0.00


[264-291]:
1d3va_PU6_264-291
CI=0.93


[292-308 ]:
1d3va_PU6_292-308
CI=0.31


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-25]:
1d3va_PU_1-25
CI=1.35


[26-50]:
1d3va_PU_26-50
CI=0.37


[51-70]:
1d3va_PU_51-70
CI=1.66


[71-91]:
1d3va_PU_71-91
CI=0.35


[92-111]:
1d3va_PU_92-111
CI=0.00


[112-137]:
1d3va_PU_112-137
CI=0.50


[138-164]:
1d3va_PU_138-164
CI=1.53


[165-194]:
1d3va_PU_165-194
CI=1.33


[195-220]:
1d3va_PU_195-220
CI=0.21


[221-246]:
1d3va_PU_221-246
CI=1.73


[247-263]:
1d3va_PU_247-263
CI=0.00


[264-291]:
1d3va_PU_264-291
CI=0.93


[292-308 ]:
1d3va_PU_292-308
CI=0.31