Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1d4aa_PU0_1-49
CI=2.06


[50-82]:
1d4aa_PU0_50-82
CI=1.71


[83-273 ]:
1d4aa_PU0_83-273
CI=3.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1d4aa_PU1_1-49
CI=2.06


[50-82]:
1d4aa_PU1_50-82
CI=1.71


[83-222]:
1d4aa_PU1_83-222
CI=2.85


[223-264]:
1d4aa_PU1_223-264
CI=1.73


[265-273 ]:
1d4aa_PU1_265-273
CI=0.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-49]:
1d4aa_PU2_1-49
CI=2.06


[50-82]:
1d4aa_PU2_50-82
CI=1.71


[83-222]:
1d4aa_PU2_83-222
CI=2.85


[223-248]:
1d4aa_PU2_223-248
CI=1.02


[249-264]:
1d4aa_PU2_249-264
CI=2.30


[265-273 ]:
1d4aa_PU2_265-273
CI=0.19


Level 3
PU
Molecule needs Java 1.4 Structure


[1-49]:
1d4aa_PU3_1-49
CI=2.06


[50-82]:
1d4aa_PU3_50-82
CI=1.71


[83-194]:
1d4aa_PU3_83-194
CI=3.22


[195-222]:
1d4aa_PU3_195-222
CI=0.00


[223-248]:
1d4aa_PU3_223-248
CI=1.02


[249-264]:
1d4aa_PU3_249-264
CI=2.30


[265-273 ]:
1d4aa_PU3_265-273
CI=0.19


Level 4
PU
Molecule needs Java 1.4 Structure


[1-49]:
1d4aa_PU4_1-49
CI=2.06


[50-82]:
1d4aa_PU4_50-82
CI=1.71


[83-149]:
1d4aa_PU4_83-149
CI=1.77


[150-171]:
1d4aa_PU4_150-171
CI=1.12


[172-194]:
1d4aa_PU4_172-194
CI=0.56


[195-222]:
1d4aa_PU4_195-222
CI=0.00


[223-248]:
1d4aa_PU4_223-248
CI=1.02


[249-264]:
1d4aa_PU4_249-264
CI=2.30


[265-273 ]:
1d4aa_PU4_265-273
CI=0.19


Level 5
PU
Molecule needs Java 1.4 Structure


[1-49]:
1d4aa_PU5_1-49
CI=2.06


[50-82]:
1d4aa_PU5_50-82
CI=1.71


[83-108]:
1d4aa_PU5_83-108
CI=0.14


[109-138]:
1d4aa_PU5_109-138
CI=0.81


[139-149]:
1d4aa_PU5_139-149
CI=0.00


[150-171]:
1d4aa_PU5_150-171
CI=1.12


[172-194]:
1d4aa_PU5_172-194
CI=0.56


[195-222]:
1d4aa_PU5_195-222
CI=0.00


[223-248]:
1d4aa_PU5_223-248
CI=1.02


[249-264]:
1d4aa_PU5_249-264
CI=2.30


[265-273 ]:
1d4aa_PU5_265-273
CI=0.19


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1d4aa_PU6_1-24
CI=0.61


[25-49]:
1d4aa_PU6_25-49
CI=0.66


[50-82]:
1d4aa_PU6_50-82
CI=1.71


[83-108]:
1d4aa_PU6_83-108
CI=0.14


[109-138]:
1d4aa_PU6_109-138
CI=0.81


[139-149]:
1d4aa_PU6_139-149
CI=0.00


[150-171]:
1d4aa_PU6_150-171
CI=1.12


[172-194]:
1d4aa_PU6_172-194
CI=0.56


[195-222]:
1d4aa_PU6_195-222
CI=0.00


[223-248]:
1d4aa_PU6_223-248
CI=1.02


[249-264]:
1d4aa_PU6_249-264
CI=2.30


[265-273 ]:
1d4aa_PU6_265-273
CI=0.19


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-24]:
1d4aa_PU_1-24
CI=0.61


[25-49]:
1d4aa_PU_25-49
CI=0.66


[50-66]:
1d4aa_PU_50-66
CI=0.10


[67-82]:
1d4aa_PU_67-82
CI=0.23


[83-108]:
1d4aa_PU_83-108
CI=0.14


[109-138]:
1d4aa_PU_109-138
CI=0.81


[139-149]:
1d4aa_PU_139-149
CI=0.00


[150-171]:
1d4aa_PU_150-171
CI=1.12


[172-194]:
1d4aa_PU_172-194
CI=0.56


[195-222]:
1d4aa_PU_195-222
CI=0.00


[223-248]:
1d4aa_PU_223-248
CI=1.02


[249-264]:
1d4aa_PU_249-264
CI=2.30


[265-273 ]:
1d4aa_PU_265-273
CI=0.19