Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-58]:
1d4ta_PU0_1-58
CI=3.64


[59-94]:
1d4ta_PU0_59-94
CI=1.63


[95-104 ]:
1d4ta_PU0_95-104
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-58]:
1d4ta_PU1_1-58
CI=3.64


[59-78]:
1d4ta_PU1_59-78
CI=1.94


[79-94]:
1d4ta_PU1_79-94
CI=0.23


[95-104 ]:
1d4ta_PU1_95-104
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1d4ta_PU2_1-19
CI=0.29


[20-58]:
1d4ta_PU2_20-58
CI=3.92


[59-78]:
1d4ta_PU2_59-78
CI=1.94


[79-94]:
1d4ta_PU2_79-94
CI=0.23


[95-104 ]:
1d4ta_PU2_95-104
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1d4ta_PU_1-19
CI=0.29


[20-39]:
1d4ta_PU_20-39
CI=0.46


[40-58]:
1d4ta_PU_40-58
CI=2.75


[59-78]:
1d4ta_PU_59-78
CI=1.94


[79-94]:
1d4ta_PU_79-94
CI=0.23


[95-104 ]:
1d4ta_PU_95-104
CI=0.00