Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU0_1-18
CI=0.00


[19-39]:
1d8ha_PU0_19-39
CI=1.26


[40-288 ]:
1d8ha_PU0_40-288
CI=4.05


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU1_1-18
CI=0.00


[19-39]:
1d8ha_PU1_19-39
CI=1.26


[40-66]:
1d8ha_PU1_40-66
CI=0.13


[67-245]:
1d8ha_PU1_67-245
CI=4.49


[246-288 ]:
1d8ha_PU1_246-288
CI=0.74


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU2_1-18
CI=0.00


[19-39]:
1d8ha_PU2_19-39
CI=1.26


[40-66]:
1d8ha_PU2_40-66
CI=0.13


[67-245]:
1d8ha_PU2_67-245
CI=4.49


[246-269]:
1d8ha_PU2_246-269
CI=1.23


[270-288 ]:
1d8ha_PU2_270-288
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU3_1-18
CI=0.00


[19-39]:
1d8ha_PU3_19-39
CI=1.26


[40-66]:
1d8ha_PU3_40-66
CI=0.13


[67-105]:
1d8ha_PU3_67-105
CI=1.87


[106-129]:
1d8ha_PU3_106-129
CI=0.32


[130-245]:
1d8ha_PU3_130-245
CI=4.13


[246-269]:
1d8ha_PU3_246-269
CI=1.23


[270-288 ]:
1d8ha_PU3_270-288
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU4_1-18
CI=0.00


[19-39]:
1d8ha_PU4_19-39
CI=1.26


[40-66]:
1d8ha_PU4_40-66
CI=0.13


[67-105]:
1d8ha_PU4_67-105
CI=1.87


[106-129]:
1d8ha_PU4_106-129
CI=0.32


[130-167]:
1d8ha_PU4_130-167
CI=3.07


[168-188]:
1d8ha_PU4_168-188
CI=2.60


[189-245]:
1d8ha_PU4_189-245
CI=2.44


[246-269]:
1d8ha_PU4_246-269
CI=1.23


[270-288 ]:
1d8ha_PU4_270-288
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU5_1-18
CI=0.00


[19-39]:
1d8ha_PU5_19-39
CI=1.26


[40-66]:
1d8ha_PU5_40-66
CI=0.13


[67-105]:
1d8ha_PU5_67-105
CI=1.87


[106-129]:
1d8ha_PU5_106-129
CI=0.32


[130-167]:
1d8ha_PU5_130-167
CI=3.07


[168-188]:
1d8ha_PU5_168-188
CI=2.60


[189-208]:
1d8ha_PU5_189-208
CI=0.00


[209-245]:
1d8ha_PU5_209-245
CI=3.72


[246-269]:
1d8ha_PU5_246-269
CI=1.23


[270-288 ]:
1d8ha_PU5_270-288
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU6_1-18
CI=0.00


[19-39]:
1d8ha_PU6_19-39
CI=1.26


[40-66]:
1d8ha_PU6_40-66
CI=0.13


[67-84]:
1d8ha_PU6_67-84
CI=0.84


[85-105]:
1d8ha_PU6_85-105
CI=0.00


[106-129]:
1d8ha_PU6_106-129
CI=0.32


[130-167]:
1d8ha_PU6_130-167
CI=3.07


[168-188]:
1d8ha_PU6_168-188
CI=2.60


[189-208]:
1d8ha_PU6_189-208
CI=0.00


[209-245]:
1d8ha_PU6_209-245
CI=3.72


[246-269]:
1d8ha_PU6_246-269
CI=1.23


[270-288 ]:
1d8ha_PU6_270-288
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-18]:
1d8ha_PU_1-18
CI=0.00


[19-39]:
1d8ha_PU_19-39
CI=1.26


[40-66]:
1d8ha_PU_40-66
CI=0.13


[67-84]:
1d8ha_PU_67-84
CI=0.84


[85-105]:
1d8ha_PU_85-105
CI=0.00


[106-129]:
1d8ha_PU_106-129
CI=0.32


[130-167]:
1d8ha_PU_130-167
CI=3.07


[168-188]:
1d8ha_PU_168-188
CI=2.60


[189-208]:
1d8ha_PU_189-208
CI=0.00


[209-228]:
1d8ha_PU_209-228
CI=1.40


[229-245]:
1d8ha_PU_229-245
CI=1.75


[246-269]:
1d8ha_PU_246-269
CI=1.23


[270-288 ]:
1d8ha_PU_270-288
CI=0.00