Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-98]:
1d9ca_PU0_1-98
CI=1.05


[99-121 ]:
1d9ca_PU0_99-121
CI=0.16


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1d9ca_PU1_1-18
CI=0.21


[19-46]:
1d9ca_PU1_19-46
CI=0.32


[47-98]:
1d9ca_PU1_47-98
CI=1.12


[99-121 ]:
1d9ca_PU1_99-121
CI=0.16


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1d9ca_PU_1-18
CI=0.21


[19-46]:
1d9ca_PU_19-46
CI=0.32


[47-74]:
1d9ca_PU_47-74
CI=0.72


[75-98]:
1d9ca_PU_75-98
CI=0.62


[99-121 ]:
1d9ca_PU_99-121
CI=0.16