Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-53]:
1dbwa_PU0_1-53
CI=3.08


[54-125 ]:
1dbwa_PU0_54-125
CI=3.11


Level 1
PU
Molecule needs Java 1.4 Structure


[1-53]:
1dbwa_PU1_1-53
CI=3.08


[54-107]:
1dbwa_PU1_54-107
CI=3.24


[108-125 ]:
1dbwa_PU1_108-125
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-53]:
1dbwa_PU2_1-53
CI=3.08


[54-76]:
1dbwa_PU2_54-76
CI=0.64


[77-107]:
1dbwa_PU2_77-107
CI=3.27


[108-125 ]:
1dbwa_PU2_108-125
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-33]:
1dbwa_PU3_1-33
CI=2.12


[34-53]:
1dbwa_PU3_34-53
CI=0.17


[54-76]:
1dbwa_PU3_54-76
CI=0.64


[77-107]:
1dbwa_PU3_77-107
CI=3.27


[108-125 ]:
1dbwa_PU3_108-125
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1dbwa_PU_1-17
CI=0.32


[18-33]:
1dbwa_PU_18-33
CI=0.86


[34-53]:
1dbwa_PU_34-53
CI=0.17


[54-76]:
1dbwa_PU_54-76
CI=0.64


[77-107]:
1dbwa_PU_77-107
CI=3.27


[108-125 ]:
1dbwa_PU_108-125
CI=0.00