Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-39]:
1dbxa_PU0_1-39
CI=0.82


[40-106]:
1dbxa_PU0_40-106
CI=3.81


[107-150 ]:
1dbxa_PU0_107-150
CI=3.04


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1dbxa_PU1_1-17
CI=0.32


[18-39]:
1dbxa_PU1_18-39
CI=1.09


[40-106]:
1dbxa_PU1_40-106
CI=3.81


[107-150 ]:
1dbxa_PU1_107-150
CI=3.04


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1dbxa_PU2_1-17
CI=0.32


[18-39]:
1dbxa_PU2_18-39
CI=1.09


[40-62]:
1dbxa_PU2_40-62
CI=2.38


[63-78]:
1dbxa_PU2_63-78
CI=1.14


[79-106]:
1dbxa_PU2_79-106
CI=1.93


[107-150 ]:
1dbxa_PU2_107-150
CI=3.04


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1dbxa_PU_1-17
CI=0.32


[18-39]:
1dbxa_PU_18-39
CI=1.09


[40-62]:
1dbxa_PU_40-62
CI=2.38


[63-78]:
1dbxa_PU_63-78
CI=1.14


[79-106]:
1dbxa_PU_79-106
CI=1.93


[107-133]:
1dbxa_PU_107-133
CI=2.32


[134-150 ]:
1dbxa_PU_134-150
CI=0.53