Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-212]:
1dcia_PU0_1-212
CI=4.45


[213-275 ]:
1dcia_PU0_213-275
CI=1.20


Level 1
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU1_1-65
CI=3.52


[66-92]:
1dcia_PU1_66-92
CI=0.68


[93-212]:
1dcia_PU1_93-212
CI=3.86


[213-275 ]:
1dcia_PU1_213-275
CI=1.20


Level 2
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU2_1-65
CI=3.52


[66-92]:
1dcia_PU2_66-92
CI=0.68


[93-212]:
1dcia_PU2_93-212
CI=3.86


[213-251]:
1dcia_PU2_213-251
CI=0.57


[252-275 ]:
1dcia_PU2_252-275
CI=0.85


Level 3
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU3_1-65
CI=3.52


[66-92]:
1dcia_PU3_66-92
CI=0.68


[93-193]:
1dcia_PU3_93-193
CI=4.08


[194-212]:
1dcia_PU3_194-212
CI=0.10


[213-251]:
1dcia_PU3_213-251
CI=0.57


[252-275 ]:
1dcia_PU3_252-275
CI=0.85


Level 4
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU4_1-65
CI=3.52


[66-92]:
1dcia_PU4_66-92
CI=0.68


[93-193]:
1dcia_PU4_93-193
CI=4.08


[194-212]:
1dcia_PU4_194-212
CI=0.10


[213-231]:
1dcia_PU4_213-231
CI=0.00


[232-251]:
1dcia_PU4_232-251
CI=0.00


[252-275 ]:
1dcia_PU4_252-275
CI=0.85


Level 5
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU5_1-65
CI=3.52


[66-92]:
1dcia_PU5_66-92
CI=0.68


[93-141]:
1dcia_PU5_93-141
CI=3.05


[142-176]:
1dcia_PU5_142-176
CI=1.46


[177-193]:
1dcia_PU5_177-193
CI=0.75


[194-212]:
1dcia_PU5_194-212
CI=0.10


[213-231]:
1dcia_PU5_213-231
CI=0.00


[232-251]:
1dcia_PU5_232-251
CI=0.00


[252-275 ]:
1dcia_PU5_252-275
CI=0.85


Level 6
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU6_1-65
CI=3.52


[66-92]:
1dcia_PU6_66-92
CI=0.68


[93-113]:
1dcia_PU6_93-113
CI=0.26


[114-141]:
1dcia_PU6_114-141
CI=2.37


[142-176]:
1dcia_PU6_142-176
CI=1.46


[177-193]:
1dcia_PU6_177-193
CI=0.75


[194-212]:
1dcia_PU6_194-212
CI=0.10


[213-231]:
1dcia_PU6_213-231
CI=0.00


[232-251]:
1dcia_PU6_232-251
CI=0.00


[252-275 ]:
1dcia_PU6_252-275
CI=0.85


Level 7
PU
Molecule needs Java 1.4 Structure


[1-65]:
1dcia_PU7_1-65
CI=3.52


[66-92]:
1dcia_PU7_66-92
CI=0.68


[93-113]:
1dcia_PU7_93-113
CI=0.26


[114-141]:
1dcia_PU7_114-141
CI=2.37


[142-160]:
1dcia_PU7_142-160
CI=0.69


[161-176]:
1dcia_PU7_161-176
CI=0.11


[177-193]:
1dcia_PU7_177-193
CI=0.75


[194-212]:
1dcia_PU7_194-212
CI=0.10


[213-231]:
1dcia_PU7_213-231
CI=0.00


[232-251]:
1dcia_PU7_232-251
CI=0.00


[252-275 ]:
1dcia_PU7_252-275
CI=0.85


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-24]:
1dcia_PU_1-24
CI=1.82


[25-47]:
1dcia_PU_25-47
CI=0.00


[48-65]:
1dcia_PU_48-65
CI=0.20


[66-92]:
1dcia_PU_66-92
CI=0.68


[93-113]:
1dcia_PU_93-113
CI=0.26


[114-141]:
1dcia_PU_114-141
CI=2.37


[142-160]:
1dcia_PU_142-160
CI=0.69


[161-176]:
1dcia_PU_161-176
CI=0.11


[177-193]:
1dcia_PU_177-193
CI=0.75


[194-212]:
1dcia_PU_194-212
CI=0.10


[213-231]:
1dcia_PU_213-231
CI=0.00


[232-251]:
1dcia_PU_232-251
CI=0.00


[252-275 ]:
1dcia_PU_252-275
CI=0.85