Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU0_1-45
CI=1.52


[46-104]:
1dcs0_PU0_46-104
CI=1.95


[105-279 ]:
1dcs0_PU0_105-279
CI=4.32


Level 1
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU1_1-45
CI=1.52


[46-104]:
1dcs0_PU1_46-104
CI=1.95


[105-236]:
1dcs0_PU1_105-236
CI=4.54


[237-270]:
1dcs0_PU1_237-270
CI=1.90


[271-279 ]:
1dcs0_PU1_271-279
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU2_1-45
CI=1.52


[46-104]:
1dcs0_PU2_46-104
CI=1.95


[105-138]:
1dcs0_PU2_105-138
CI=0.32


[139-236]:
1dcs0_PU2_139-236
CI=5.21


[237-270]:
1dcs0_PU2_237-270
CI=1.90


[271-279 ]:
1dcs0_PU2_271-279
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU3_1-45
CI=1.52


[46-104]:
1dcs0_PU3_46-104
CI=1.95


[105-121]:
1dcs0_PU3_105-121
CI=0.00


[122-138]:
1dcs0_PU3_122-138
CI=0.11


[139-236]:
1dcs0_PU3_139-236
CI=5.21


[237-270]:
1dcs0_PU3_237-270
CI=1.90


[271-279 ]:
1dcs0_PU3_271-279
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU4_1-45
CI=1.52


[46-65]:
1dcs0_PU4_46-65
CI=0.00


[66-104]:
1dcs0_PU4_66-104
CI=2.16


[105-121]:
1dcs0_PU4_105-121
CI=0.00


[122-138]:
1dcs0_PU4_122-138
CI=0.11


[139-236]:
1dcs0_PU4_139-236
CI=5.21


[237-270]:
1dcs0_PU4_237-270
CI=1.90


[271-279 ]:
1dcs0_PU4_271-279
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU5_1-45
CI=1.52


[46-65]:
1dcs0_PU5_46-65
CI=0.00


[66-86]:
1dcs0_PU5_66-86
CI=2.59


[87-104]:
1dcs0_PU5_87-104
CI=0.10


[105-121]:
1dcs0_PU5_105-121
CI=0.00


[122-138]:
1dcs0_PU5_122-138
CI=0.11


[139-236]:
1dcs0_PU5_139-236
CI=5.21


[237-270]:
1dcs0_PU5_237-270
CI=1.90


[271-279 ]:
1dcs0_PU5_271-279
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU6_1-45
CI=1.52


[46-65]:
1dcs0_PU6_46-65
CI=0.00


[66-86]:
1dcs0_PU6_66-86
CI=2.59


[87-104]:
1dcs0_PU6_87-104
CI=0.10


[105-121]:
1dcs0_PU6_105-121
CI=0.00


[122-138]:
1dcs0_PU6_122-138
CI=0.11


[139-194]:
1dcs0_PU6_139-194
CI=1.09


[195-213]:
1dcs0_PU6_195-213
CI=1.95


[214-236]:
1dcs0_PU6_214-236
CI=0.00


[237-270]:
1dcs0_PU6_237-270
CI=1.90


[271-279 ]:
1dcs0_PU6_271-279
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-45]:
1dcs0_PU7_1-45
CI=1.52


[46-65]:
1dcs0_PU7_46-65
CI=0.00


[66-86]:
1dcs0_PU7_66-86
CI=2.59


[87-104]:
1dcs0_PU7_87-104
CI=0.10


[105-121]:
1dcs0_PU7_105-121
CI=0.00


[122-138]:
1dcs0_PU7_122-138
CI=0.11


[139-161]:
1dcs0_PU7_139-161
CI=0.08


[162-194]:
1dcs0_PU7_162-194
CI=1.78


[195-213]:
1dcs0_PU7_195-213
CI=1.95


[214-236]:
1dcs0_PU7_214-236
CI=0.00


[237-270]:
1dcs0_PU7_237-270
CI=1.90


[271-279 ]:
1dcs0_PU7_271-279
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-29]:
1dcs0_PU8_1-29
CI=0.38


[30-45]:
1dcs0_PU8_30-45
CI=0.00


[46-65]:
1dcs0_PU8_46-65
CI=0.00


[66-86]:
1dcs0_PU8_66-86
CI=2.59


[87-104]:
1dcs0_PU8_87-104
CI=0.10


[105-121]:
1dcs0_PU8_105-121
CI=0.00


[122-138]:
1dcs0_PU8_122-138
CI=0.11


[139-161]:
1dcs0_PU8_139-161
CI=0.08


[162-194]:
1dcs0_PU8_162-194
CI=1.78


[195-213]:
1dcs0_PU8_195-213
CI=1.95


[214-236]:
1dcs0_PU8_214-236
CI=0.00


[237-270]:
1dcs0_PU8_237-270
CI=1.90


[271-279 ]:
1dcs0_PU8_271-279
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-29]:
1dcs0_PU_1-29
CI=0.38


[30-45]:
1dcs0_PU_30-45
CI=0.00


[46-65]:
1dcs0_PU_46-65
CI=0.00


[66-86]:
1dcs0_PU_66-86
CI=2.59


[87-104]:
1dcs0_PU_87-104
CI=0.10


[105-121]:
1dcs0_PU_105-121
CI=0.00


[122-138]:
1dcs0_PU_122-138
CI=0.11


[139-161]:
1dcs0_PU_139-161
CI=0.08


[162-194]:
1dcs0_PU_162-194
CI=1.78


[195-213]:
1dcs0_PU_195-213
CI=1.95


[214-236]:
1dcs0_PU_214-236
CI=0.00


[237-253]:
1dcs0_PU_237-253
CI=0.31


[254-270]:
1dcs0_PU_254-270
CI=0.32


[271-279 ]:
1dcs0_PU_271-279
CI=0.00