Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1dd3c_PU0_1-49
CI=1.42


[50-128 ]:
1dd3c_PU0_50-128
CI=3.71


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1dd3c_PU1_1-49
CI=1.42


[50-65]:
1dd3c_PU1_50-65
CI=0.46


[66-94]:
1dd3c_PU1_66-94
CI=1.35


[95-128 ]:
1dd3c_PU1_95-128
CI=0.66


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1dd3c_PU2_1-17
CI=0.10


[18-49]:
1dd3c_PU2_18-49
CI=1.05


[50-65]:
1dd3c_PU2_50-65
CI=0.46


[66-94]:
1dd3c_PU2_66-94
CI=1.35


[95-128 ]:
1dd3c_PU2_95-128
CI=0.66


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1dd3c_PU_1-17
CI=0.10


[18-49]:
1dd3c_PU_18-49
CI=1.05


[50-65]:
1dd3c_PU_50-65
CI=0.46


[66-94]:
1dd3c_PU_66-94
CI=1.35


[95-111]:
1dd3c_PU_95-111
CI=0.00


[112-128 ]:
1dd3c_PU_112-128
CI=1.07