Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-59]:
1ddwa_PU0_1-59
CI=4.20


[60-109 ]:
1ddwa_PU0_60-109
CI=3.02


Level 1
PU
Molecule needs Java 1.4 Structure


[1-59]:
1ddwa_PU1_1-59
CI=4.20


[60-87]:
1ddwa_PU1_60-87
CI=2.57


[88-109 ]:
1ddwa_PU1_88-109
CI=0.09


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-29]:
1ddwa_PU_1-29
CI=1.52


[30-59]:
1ddwa_PU_30-59
CI=3.17


[60-87]:
1ddwa_PU_60-87
CI=2.57


[88-109 ]:
1ddwa_PU_88-109
CI=0.09