Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-136]:
1deua_PU0_1-136
CI=3.33


[137-157]:
1deua_PU0_137-157
CI=1.79


[158-275 ]:
1deua_PU0_158-275
CI=4.47


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU1_1-19
CI=0.09


[20-38]:
1deua_PU1_20-38
CI=0.00


[39-136]:
1deua_PU1_39-136
CI=3.89


[137-157]:
1deua_PU1_137-157
CI=1.79


[158-275 ]:
1deua_PU1_158-275
CI=4.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU2_1-19
CI=0.09


[20-38]:
1deua_PU2_20-38
CI=0.00


[39-136]:
1deua_PU2_39-136
CI=3.89


[137-157]:
1deua_PU2_137-157
CI=1.79


[158-182]:
1deua_PU2_158-182
CI=0.08


[183-266]:
1deua_PU2_183-266
CI=4.63


[267-275 ]:
1deua_PU2_267-275
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU3_1-19
CI=0.09


[20-38]:
1deua_PU3_20-38
CI=0.00


[39-90]:
1deua_PU3_39-90
CI=2.26


[91-136]:
1deua_PU3_91-136
CI=2.49


[137-157]:
1deua_PU3_137-157
CI=1.79


[158-182]:
1deua_PU3_158-182
CI=0.08


[183-266]:
1deua_PU3_183-266
CI=4.63


[267-275 ]:
1deua_PU3_267-275
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU4_1-19
CI=0.09


[20-38]:
1deua_PU4_20-38
CI=0.00


[39-90]:
1deua_PU4_39-90
CI=2.26


[91-136]:
1deua_PU4_91-136
CI=2.49


[137-157]:
1deua_PU4_137-157
CI=1.79


[158-182]:
1deua_PU4_158-182
CI=0.08


[183-214]:
1deua_PU4_183-214
CI=1.42


[215-247]:
1deua_PU4_215-247
CI=3.29


[248-266]:
1deua_PU4_248-266
CI=1.76


[267-275 ]:
1deua_PU4_267-275
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU5_1-19
CI=0.09


[20-38]:
1deua_PU5_20-38
CI=0.00


[39-62]:
1deua_PU5_39-62
CI=1.01


[63-90]:
1deua_PU5_63-90
CI=1.14


[91-136]:
1deua_PU5_91-136
CI=2.49


[137-157]:
1deua_PU5_137-157
CI=1.79


[158-182]:
1deua_PU5_158-182
CI=0.08


[183-214]:
1deua_PU5_183-214
CI=1.42


[215-247]:
1deua_PU5_215-247
CI=3.29


[248-266]:
1deua_PU5_248-266
CI=1.76


[267-275 ]:
1deua_PU5_267-275
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU6_1-19
CI=0.09


[20-38]:
1deua_PU6_20-38
CI=0.00


[39-62]:
1deua_PU6_39-62
CI=1.01


[63-90]:
1deua_PU6_63-90
CI=1.14


[91-136]:
1deua_PU6_91-136
CI=2.49


[137-157]:
1deua_PU6_137-157
CI=1.79


[158-182]:
1deua_PU6_158-182
CI=0.08


[183-214]:
1deua_PU6_183-214
CI=1.42


[215-231]:
1deua_PU6_215-231
CI=2.09


[232-247]:
1deua_PU6_232-247
CI=1.60


[248-266]:
1deua_PU6_248-266
CI=1.76


[267-275 ]:
1deua_PU6_267-275
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-19]:
1deua_PU_1-19
CI=0.09


[20-38]:
1deua_PU_20-38
CI=0.00


[39-62]:
1deua_PU_39-62
CI=1.01


[63-90]:
1deua_PU_63-90
CI=1.14


[91-120]:
1deua_PU_91-120
CI=1.25


[121-136]:
1deua_PU_121-136
CI=0.00


[137-157]:
1deua_PU_137-157
CI=1.79


[158-182]:
1deua_PU_158-182
CI=0.08


[183-214]:
1deua_PU_183-214
CI=1.42


[215-231]:
1deua_PU_215-231
CI=2.09


[232-247]:
1deua_PU_232-247
CI=1.60


[248-266]:
1deua_PU_248-266
CI=1.76


[267-275 ]:
1deua_PU_267-275
CI=0.00