Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-107]:
1dj0a_PU0_1-107
CI=4.47


[108-237]:
1dj0a_PU0_108-237
CI=4.52


[238-264 ]:
1dj0a_PU0_238-264
CI=0.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-107]:
1dj0a_PU1_1-107
CI=4.47


[108-136]:
1dj0a_PU1_108-136
CI=1.95


[137-237]:
1dj0a_PU1_137-237
CI=3.96


[238-264 ]:
1dj0a_PU1_238-264
CI=0.77


Level 2
PU
Molecule needs Java 1.4 Structure


[1-107]:
1dj0a_PU2_1-107
CI=4.47


[108-136]:
1dj0a_PU2_108-136
CI=1.95


[137-170]:
1dj0a_PU2_137-170
CI=0.68


[171-192]:
1dj0a_PU2_171-192
CI=2.90


[193-237]:
1dj0a_PU2_193-237
CI=1.73


[238-264 ]:
1dj0a_PU2_238-264
CI=0.77


Level 3
PU
Molecule needs Java 1.4 Structure


[1-107]:
1dj0a_PU3_1-107
CI=4.47


[108-136]:
1dj0a_PU3_108-136
CI=1.95


[137-153]:
1dj0a_PU3_137-153
CI=0.00


[154-170]:
1dj0a_PU3_154-170
CI=0.87


[171-192]:
1dj0a_PU3_171-192
CI=2.90


[193-237]:
1dj0a_PU3_193-237
CI=1.73


[238-264 ]:
1dj0a_PU3_238-264
CI=0.77


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dj0a_PU4_1-16
CI=0.00


[17-32]:
1dj0a_PU4_17-32
CI=2.90


[33-107]:
1dj0a_PU4_33-107
CI=2.16


[108-136]:
1dj0a_PU4_108-136
CI=1.95


[137-153]:
1dj0a_PU4_137-153
CI=0.00


[154-170]:
1dj0a_PU4_154-170
CI=0.87


[171-192]:
1dj0a_PU4_171-192
CI=2.90


[193-237]:
1dj0a_PU4_193-237
CI=1.73


[238-264 ]:
1dj0a_PU4_238-264
CI=0.77


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dj0a_PU5_1-16
CI=0.00


[17-32]:
1dj0a_PU5_17-32
CI=2.90


[33-66]:
1dj0a_PU5_33-66
CI=1.52


[67-96]:
1dj0a_PU5_67-96
CI=0.82


[97-107]:
1dj0a_PU5_97-107
CI=0.00


[108-136]:
1dj0a_PU5_108-136
CI=1.95


[137-153]:
1dj0a_PU5_137-153
CI=0.00


[154-170]:
1dj0a_PU5_154-170
CI=0.87


[171-192]:
1dj0a_PU5_171-192
CI=2.90


[193-237]:
1dj0a_PU5_193-237
CI=1.73


[238-264 ]:
1dj0a_PU5_238-264
CI=0.77


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dj0a_PU6_1-16
CI=0.00


[17-32]:
1dj0a_PU6_17-32
CI=2.90


[33-49]:
1dj0a_PU6_33-49
CI=0.97


[50-66]:
1dj0a_PU6_50-66
CI=0.66


[67-96]:
1dj0a_PU6_67-96
CI=0.82


[97-107]:
1dj0a_PU6_97-107
CI=0.00


[108-136]:
1dj0a_PU6_108-136
CI=1.95


[137-153]:
1dj0a_PU6_137-153
CI=0.00


[154-170]:
1dj0a_PU6_154-170
CI=0.87


[171-192]:
1dj0a_PU6_171-192
CI=2.90


[193-237]:
1dj0a_PU6_193-237
CI=1.73


[238-264 ]:
1dj0a_PU6_238-264
CI=0.77


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-16]:
1dj0a_PU_1-16
CI=0.00


[17-32]:
1dj0a_PU_17-32
CI=2.90


[33-49]:
1dj0a_PU_33-49
CI=0.97


[50-66]:
1dj0a_PU_50-66
CI=0.66


[67-96]:
1dj0a_PU_67-96
CI=0.82


[97-107]:
1dj0a_PU_97-107
CI=0.00


[108-136]:
1dj0a_PU_108-136
CI=1.95


[137-153]:
1dj0a_PU_137-153
CI=0.00


[154-170]:
1dj0a_PU_154-170
CI=0.87


[171-192]:
1dj0a_PU_171-192
CI=2.90


[193-215]:
1dj0a_PU_193-215
CI=0.25


[216-237]:
1dj0a_PU_216-237
CI=0.17


[238-264 ]:
1dj0a_PU_238-264
CI=0.77