Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dj8a_PU0_1-16
CI=0.11


[17-52]:
1dj8a_PU0_17-52
CI=0.78


[53-79 ]:
1dj8a_PU0_53-79
CI=0.76


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1dj8a_PU_1-16
CI=0.11


[17-33]:
1dj8a_PU_17-33
CI=0.10


[34-52]:
1dj8a_PU_34-52
CI=0.00


[53-79 ]:
1dj8a_PU_53-79
CI=0.76