Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1dk0a_PU0_1-18
CI=0.00


[19-149]:
1dk0a_PU0_19-149
CI=5.11


[150-173 ]:
1dk0a_PU0_150-173
CI=1.08


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1dk0a_PU1_1-18
CI=0.00


[19-41]:
1dk0a_PU1_19-41
CI=0.40


[42-132]:
1dk0a_PU1_42-132
CI=5.61


[133-149]:
1dk0a_PU1_133-149
CI=2.06


[150-173 ]:
1dk0a_PU1_150-173
CI=1.08


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1dk0a_PU2_1-18
CI=0.00


[19-41]:
1dk0a_PU2_19-41
CI=0.40


[42-91]:
1dk0a_PU2_42-91
CI=4.09


[92-113]:
1dk0a_PU2_92-113
CI=3.08


[114-132]:
1dk0a_PU2_114-132
CI=1.07


[133-149]:
1dk0a_PU2_133-149
CI=2.06


[150-173 ]:
1dk0a_PU2_150-173
CI=1.08


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1dk0a_PU_1-18
CI=0.00


[19-41]:
1dk0a_PU_19-41
CI=0.40


[42-68]:
1dk0a_PU_42-68
CI=2.88


[69-91]:
1dk0a_PU_69-91
CI=2.72


[92-113]:
1dk0a_PU_92-113
CI=3.08


[114-132]:
1dk0a_PU_114-132
CI=1.07


[133-149]:
1dk0a_PU_133-149
CI=2.06


[150-173 ]:
1dk0a_PU_150-173
CI=1.08