Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU0_1-67
CI=2.98


[68-303 ]:
1dkia_PU0_68-303
CI=5.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU1_1-67
CI=2.98


[68-83]:
1dkia_PU1_68-83
CI=0.11


[84-219]:
1dkia_PU1_84-219
CI=3.87


[220-303 ]:
1dkia_PU1_220-303
CI=3.58


Level 2
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU2_1-67
CI=2.98


[68-83]:
1dkia_PU2_68-83
CI=0.11


[84-219]:
1dkia_PU2_84-219
CI=3.87


[220-262]:
1dkia_PU2_220-262
CI=0.71


[263-293]:
1dkia_PU2_263-293
CI=2.90


[294-303 ]:
1dkia_PU2_294-303
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU3_1-67
CI=2.98


[68-83]:
1dkia_PU3_68-83
CI=0.11


[84-219]:
1dkia_PU3_84-219
CI=3.87


[220-239]:
1dkia_PU3_220-239
CI=0.09


[240-262]:
1dkia_PU3_240-262
CI=1.22


[263-293]:
1dkia_PU3_263-293
CI=2.90


[294-303 ]:
1dkia_PU3_294-303
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU4_1-67
CI=2.98


[68-83]:
1dkia_PU4_68-83
CI=0.11


[84-161]:
1dkia_PU4_84-161
CI=2.69


[162-182]:
1dkia_PU4_162-182
CI=1.22


[183-219]:
1dkia_PU4_183-219
CI=1.37


[220-239]:
1dkia_PU4_220-239
CI=0.09


[240-262]:
1dkia_PU4_240-262
CI=1.22


[263-293]:
1dkia_PU4_263-293
CI=2.90


[294-303 ]:
1dkia_PU4_294-303
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU5_1-67
CI=2.98


[68-83]:
1dkia_PU5_68-83
CI=0.11


[84-127]:
1dkia_PU5_84-127
CI=1.62


[128-161]:
1dkia_PU5_128-161
CI=3.15


[162-182]:
1dkia_PU5_162-182
CI=1.22


[183-219]:
1dkia_PU5_183-219
CI=1.37


[220-239]:
1dkia_PU5_220-239
CI=0.09


[240-262]:
1dkia_PU5_240-262
CI=1.22


[263-293]:
1dkia_PU5_263-293
CI=2.90


[294-303 ]:
1dkia_PU5_294-303
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-67]:
1dkia_PU6_1-67
CI=2.98


[68-83]:
1dkia_PU6_68-83
CI=0.11


[84-111]:
1dkia_PU6_84-111
CI=2.51


[112-127]:
1dkia_PU6_112-127
CI=0.00


[128-161]:
1dkia_PU6_128-161
CI=3.15


[162-182]:
1dkia_PU6_162-182
CI=1.22


[183-219]:
1dkia_PU6_183-219
CI=1.37


[220-239]:
1dkia_PU6_220-239
CI=0.09


[240-262]:
1dkia_PU6_240-262
CI=1.22


[263-293]:
1dkia_PU6_263-293
CI=2.90


[294-303 ]:
1dkia_PU6_294-303
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-43]:
1dkia_PU7_1-43
CI=3.47


[44-67]:
1dkia_PU7_44-67
CI=0.24


[68-83]:
1dkia_PU7_68-83
CI=0.11


[84-111]:
1dkia_PU7_84-111
CI=2.51


[112-127]:
1dkia_PU7_112-127
CI=0.00


[128-161]:
1dkia_PU7_128-161
CI=3.15


[162-182]:
1dkia_PU7_162-182
CI=1.22


[183-219]:
1dkia_PU7_183-219
CI=1.37


[220-239]:
1dkia_PU7_220-239
CI=0.09


[240-262]:
1dkia_PU7_240-262
CI=1.22


[263-293]:
1dkia_PU7_263-293
CI=2.90


[294-303 ]:
1dkia_PU7_294-303
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-43]:
1dkia_PU8_1-43
CI=3.47


[44-67]:
1dkia_PU8_44-67
CI=0.24


[68-83]:
1dkia_PU8_68-83
CI=0.11


[84-111]:
1dkia_PU8_84-111
CI=2.51


[112-127]:
1dkia_PU8_112-127
CI=0.00


[128-161]:
1dkia_PU8_128-161
CI=3.15


[162-182]:
1dkia_PU8_162-182
CI=1.22


[183-203]:
1dkia_PU8_183-203
CI=0.97


[204-219]:
1dkia_PU8_204-219
CI=0.12


[220-239]:
1dkia_PU8_220-239
CI=0.09


[240-262]:
1dkia_PU8_240-262
CI=1.22


[263-293]:
1dkia_PU8_263-293
CI=2.90


[294-303 ]:
1dkia_PU8_294-303
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-18]:
1dkia_PU9_1-18
CI=1.24


[19-43]:
1dkia_PU9_19-43
CI=2.94


[44-67]:
1dkia_PU9_44-67
CI=0.24


[68-83]:
1dkia_PU9_68-83
CI=0.11


[84-111]:
1dkia_PU9_84-111
CI=2.51


[112-127]:
1dkia_PU9_112-127
CI=0.00


[128-161]:
1dkia_PU9_128-161
CI=3.15


[162-182]:
1dkia_PU9_162-182
CI=1.22


[183-203]:
1dkia_PU9_183-203
CI=0.97


[204-219]:
1dkia_PU9_204-219
CI=0.12


[220-239]:
1dkia_PU9_220-239
CI=0.09


[240-262]:
1dkia_PU9_240-262
CI=1.22


[263-293]:
1dkia_PU9_263-293
CI=2.90


[294-303 ]:
1dkia_PU9_294-303
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-18]:
1dkia_PU_1-18
CI=1.24


[19-43]:
1dkia_PU_19-43
CI=2.94


[44-67]:
1dkia_PU_44-67
CI=0.24


[68-83]:
1dkia_PU_68-83
CI=0.11


[84-111]:
1dkia_PU_84-111
CI=2.51


[112-127]:
1dkia_PU_112-127
CI=0.00


[128-145]:
1dkia_PU_128-145
CI=0.00


[146-161]:
1dkia_PU_146-161
CI=0.00


[162-182]:
1dkia_PU_162-182
CI=1.22


[183-203]:
1dkia_PU_183-203
CI=0.97


[204-219]:
1dkia_PU_204-219
CI=0.12


[220-239]:
1dkia_PU_220-239
CI=0.09


[240-262]:
1dkia_PU_240-262
CI=1.22


[263-293]:
1dkia_PU_263-293
CI=2.90


[294-303 ]:
1dkia_PU_294-303
CI=0.00