Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1dlwa_PU0_1-62
CI=1.57


[63-116 ]:
1dlwa_PU0_63-116
CI=1.53


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dlwa_PU1_1-19
CI=0.28


[20-38]:
1dlwa_PU1_20-38
CI=0.68


[39-62]:
1dlwa_PU1_39-62
CI=0.77


[63-116 ]:
1dlwa_PU1_63-116
CI=1.53


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dlwa_PU2_1-19
CI=0.28


[20-38]:
1dlwa_PU2_20-38
CI=0.68


[39-62]:
1dlwa_PU2_39-62
CI=0.77


[63-80]:
1dlwa_PU2_63-80
CI=0.00


[81-116 ]:
1dlwa_PU2_81-116
CI=0.42


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-19]:
1dlwa_PU_1-19
CI=0.28


[20-38]:
1dlwa_PU_20-38
CI=0.68


[39-62]:
1dlwa_PU_39-62
CI=0.77


[63-80]:
1dlwa_PU_63-80
CI=0.00


[81-100]:
1dlwa_PU_81-100
CI=0.37


[101-116 ]:
1dlwa_PU_101-116
CI=0.00