Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1dmga_PU0_1-27
CI=2.12


[28-55]:
1dmga_PU0_28-55
CI=0.86


[56-172 ]:
1dmga_PU0_56-172
CI=3.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1dmga_PU1_1-27
CI=2.12


[28-55]:
1dmga_PU1_28-55
CI=0.86


[56-74]:
1dmga_PU1_56-74
CI=0.29


[75-127]:
1dmga_PU1_75-127
CI=3.08


[128-172 ]:
1dmga_PU1_128-172
CI=1.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1dmga_PU2_1-27
CI=2.12


[28-55]:
1dmga_PU2_28-55
CI=0.86


[56-74]:
1dmga_PU2_56-74
CI=0.29


[75-127]:
1dmga_PU2_75-127
CI=3.08


[128-145]:
1dmga_PU2_128-145
CI=1.24


[146-172 ]:
1dmga_PU2_146-172
CI=0.14


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1dmga_PU_1-27
CI=2.12


[28-55]:
1dmga_PU_28-55
CI=0.86


[56-74]:
1dmga_PU_56-74
CI=0.29


[75-97]:
1dmga_PU_75-97
CI=0.24


[98-127]:
1dmga_PU_98-127
CI=2.34


[128-145]:
1dmga_PU_128-145
CI=1.24


[146-172 ]:
1dmga_PU_146-172
CI=0.14