Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-195]:
1dpjb_PU0_1-195
CI=4.92


[196-308]:
1dpjb_PU0_196-308
CI=4.41


[309-329 ]:
1dpjb_PU0_309-329
CI=2.25


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU1_1-21
CI=0.90


[22-146]:
1dpjb_PU1_22-146
CI=4.50


[147-195]:
1dpjb_PU1_147-195
CI=1.97


[196-308]:
1dpjb_PU1_196-308
CI=4.41


[309-329 ]:
1dpjb_PU1_309-329
CI=2.25


Level 2
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU2_1-21
CI=0.90


[22-146]:
1dpjb_PU2_22-146
CI=4.50


[147-179]:
1dpjb_PU2_147-179
CI=2.72


[180-195]:
1dpjb_PU2_180-195
CI=0.35


[196-308]:
1dpjb_PU2_196-308
CI=4.41


[309-329 ]:
1dpjb_PU2_309-329
CI=2.25


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU3_1-21
CI=0.90


[22-146]:
1dpjb_PU3_22-146
CI=4.50


[147-179]:
1dpjb_PU3_147-179
CI=2.72


[180-195]:
1dpjb_PU3_180-195
CI=0.35


[196-234]:
1dpjb_PU3_196-234
CI=1.71


[235-287]:
1dpjb_PU3_235-287
CI=2.54


[288-308]:
1dpjb_PU3_288-308
CI=0.61


[309-329 ]:
1dpjb_PU3_309-329
CI=2.25


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU4_1-21
CI=0.90


[22-146]:
1dpjb_PU4_22-146
CI=4.50


[147-179]:
1dpjb_PU4_147-179
CI=2.72


[180-195]:
1dpjb_PU4_180-195
CI=0.35


[196-216]:
1dpjb_PU4_196-216
CI=2.76


[217-234]:
1dpjb_PU4_217-234
CI=0.19


[235-287]:
1dpjb_PU4_235-287
CI=2.54


[288-308]:
1dpjb_PU4_288-308
CI=0.61


[309-329 ]:
1dpjb_PU4_309-329
CI=2.25


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU5_1-21
CI=0.90


[22-124]:
1dpjb_PU5_22-124
CI=4.52


[125-146]:
1dpjb_PU5_125-146
CI=0.68


[147-179]:
1dpjb_PU5_147-179
CI=2.72


[180-195]:
1dpjb_PU5_180-195
CI=0.35


[196-216]:
1dpjb_PU5_196-216
CI=2.76


[217-234]:
1dpjb_PU5_217-234
CI=0.19


[235-287]:
1dpjb_PU5_235-287
CI=2.54


[288-308]:
1dpjb_PU5_288-308
CI=0.61


[309-329 ]:
1dpjb_PU5_309-329
CI=2.25


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU6_1-21
CI=0.90


[22-63]:
1dpjb_PU6_22-63
CI=1.45


[64-103]:
1dpjb_PU6_64-103
CI=3.28


[104-124]:
1dpjb_PU6_104-124
CI=0.09


[125-146]:
1dpjb_PU6_125-146
CI=0.68


[147-179]:
1dpjb_PU6_147-179
CI=2.72


[180-195]:
1dpjb_PU6_180-195
CI=0.35


[196-216]:
1dpjb_PU6_196-216
CI=2.76


[217-234]:
1dpjb_PU6_217-234
CI=0.19


[235-287]:
1dpjb_PU6_235-287
CI=2.54


[288-308]:
1dpjb_PU6_288-308
CI=0.61


[309-329 ]:
1dpjb_PU6_309-329
CI=2.25


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU7_1-21
CI=0.90


[22-63]:
1dpjb_PU7_22-63
CI=1.45


[64-86]:
1dpjb_PU7_64-86
CI=2.23


[87-103]:
1dpjb_PU7_87-103
CI=2.20


[104-124]:
1dpjb_PU7_104-124
CI=0.09


[125-146]:
1dpjb_PU7_125-146
CI=0.68


[147-179]:
1dpjb_PU7_147-179
CI=2.72


[180-195]:
1dpjb_PU7_180-195
CI=0.35


[196-216]:
1dpjb_PU7_196-216
CI=2.76


[217-234]:
1dpjb_PU7_217-234
CI=0.19


[235-287]:
1dpjb_PU7_235-287
CI=2.54


[288-308]:
1dpjb_PU7_288-308
CI=0.61


[309-329 ]:
1dpjb_PU7_309-329
CI=2.25


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU8_1-21
CI=0.90


[22-63]:
1dpjb_PU8_22-63
CI=1.45


[64-86]:
1dpjb_PU8_64-86
CI=2.23


[87-103]:
1dpjb_PU8_87-103
CI=2.20


[104-124]:
1dpjb_PU8_104-124
CI=0.09


[125-146]:
1dpjb_PU8_125-146
CI=0.68


[147-179]:
1dpjb_PU8_147-179
CI=2.72


[180-195]:
1dpjb_PU8_180-195
CI=0.35


[196-216]:
1dpjb_PU8_196-216
CI=2.76


[217-234]:
1dpjb_PU8_217-234
CI=0.19


[235-258]:
1dpjb_PU8_235-258
CI=1.32


[259-287]:
1dpjb_PU8_259-287
CI=1.84


[288-308]:
1dpjb_PU8_288-308
CI=0.61


[309-329 ]:
1dpjb_PU8_309-329
CI=2.25


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU9_1-21
CI=0.90


[22-42]:
1dpjb_PU9_22-42
CI=0.17


[43-63]:
1dpjb_PU9_43-63
CI=0.63


[64-86]:
1dpjb_PU9_64-86
CI=2.23


[87-103]:
1dpjb_PU9_87-103
CI=2.20


[104-124]:
1dpjb_PU9_104-124
CI=0.09


[125-146]:
1dpjb_PU9_125-146
CI=0.68


[147-179]:
1dpjb_PU9_147-179
CI=2.72


[180-195]:
1dpjb_PU9_180-195
CI=0.35


[196-216]:
1dpjb_PU9_196-216
CI=2.76


[217-234]:
1dpjb_PU9_217-234
CI=0.19


[235-258]:
1dpjb_PU9_235-258
CI=1.32


[259-287]:
1dpjb_PU9_259-287
CI=1.84


[288-308]:
1dpjb_PU9_288-308
CI=0.61


[309-329 ]:
1dpjb_PU9_309-329
CI=2.25


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1dpjb_PU_1-21
CI=0.90


[22-42]:
1dpjb_PU_22-42
CI=0.17


[43-63]:
1dpjb_PU_43-63
CI=0.63


[64-86]:
1dpjb_PU_64-86
CI=2.23


[87-103]:
1dpjb_PU_87-103
CI=2.20


[104-124]:
1dpjb_PU_104-124
CI=0.09


[125-146]:
1dpjb_PU_125-146
CI=0.68


[147-163]:
1dpjb_PU_147-163
CI=0.11


[164-179]:
1dpjb_PU_164-179
CI=0.00


[180-195]:
1dpjb_PU_180-195
CI=0.35


[196-216]:
1dpjb_PU_196-216
CI=2.76


[217-234]:
1dpjb_PU_217-234
CI=0.19


[235-258]:
1dpjb_PU_235-258
CI=1.32


[259-287]:
1dpjb_PU_259-287
CI=1.84


[288-308]:
1dpjb_PU_288-308
CI=0.61


[309-329 ]:
1dpjb_PU_309-329
CI=2.25