Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-51]:
1dqga_PU0_1-51
CI=4.01


[52-118]:
1dqga_PU0_52-118
CI=4.58


[119-134 ]:
1dqga_PU0_119-134
CI=1.49


Level 1
PU
Molecule needs Java 1.4 Structure


[1-51]:
1dqga_PU1_1-51
CI=4.01


[52-78]:
1dqga_PU1_52-78
CI=2.74


[79-118]:
1dqga_PU1_79-118
CI=4.01


[119-134 ]:
1dqga_PU1_119-134
CI=1.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-51]:
1dqga_PU2_1-51
CI=4.01


[52-78]:
1dqga_PU2_52-78
CI=2.74


[79-97]:
1dqga_PU2_79-97
CI=2.65


[98-118]:
1dqga_PU2_98-118
CI=1.43


[119-134 ]:
1dqga_PU2_119-134
CI=1.49


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-31]:
1dqga_PU_1-31
CI=2.32


[32-51]:
1dqga_PU_32-51
CI=2.60


[52-78]:
1dqga_PU_52-78
CI=2.74


[79-97]:
1dqga_PU_79-97
CI=2.65


[98-118]:
1dqga_PU_98-118
CI=1.43


[119-134 ]:
1dqga_PU_119-134
CI=1.49