Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-25]:
1dqta_PU0_1-25
CI=2.04


[26-79]:
1dqta_PU0_26-79
CI=3.92


[80-117 ]:
1dqta_PU0_80-117
CI=2.77


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1dqta_PU1_1-25
CI=2.04


[26-54]:
1dqta_PU1_26-54
CI=2.49


[55-79]:
1dqta_PU1_55-79
CI=3.10


[80-117 ]:
1dqta_PU1_80-117
CI=2.77


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1dqta_PU_1-25
CI=2.04


[26-54]:
1dqta_PU_26-54
CI=2.49


[55-79]:
1dqta_PU_55-79
CI=3.10


[80-96]:
1dqta_PU_80-96
CI=0.00


[97-117 ]:
1dqta_PU_97-117
CI=0.17