Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-189]:
1dqza_PU0_1-189
CI=4.84


[190-266]:
1dqza_PU0_190-266
CI=3.60


[267-280 ]:
1dqza_PU0_267-280
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-149]:
1dqza_PU1_1-149
CI=5.01


[150-189]:
1dqza_PU1_150-189
CI=1.57


[190-266]:
1dqza_PU1_190-266
CI=3.60


[267-280 ]:
1dqza_PU1_267-280
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-113]:
1dqza_PU2_1-113
CI=3.88


[114-149]:
1dqza_PU2_114-149
CI=4.87


[150-189]:
1dqza_PU2_150-189
CI=1.57


[190-266]:
1dqza_PU2_190-266
CI=3.60


[267-280 ]:
1dqza_PU2_267-280
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-72]:
1dqza_PU3_1-72
CI=4.27


[73-113]:
1dqza_PU3_73-113
CI=1.72


[114-149]:
1dqza_PU3_114-149
CI=4.87


[150-189]:
1dqza_PU3_150-189
CI=1.57


[190-266]:
1dqza_PU3_190-266
CI=3.60


[267-280 ]:
1dqza_PU3_267-280
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-72]:
1dqza_PU4_1-72
CI=4.27


[73-97]:
1dqza_PU4_73-97
CI=2.25


[98-113]:
1dqza_PU4_98-113
CI=0.81


[114-149]:
1dqza_PU4_114-149
CI=4.87


[150-189]:
1dqza_PU4_150-189
CI=1.57


[190-266]:
1dqza_PU4_190-266
CI=3.60


[267-280 ]:
1dqza_PU4_267-280
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1dqza_PU5_1-24
CI=2.13


[25-72]:
1dqza_PU5_25-72
CI=3.80


[73-97]:
1dqza_PU5_73-97
CI=2.25


[98-113]:
1dqza_PU5_98-113
CI=0.81


[114-149]:
1dqza_PU5_114-149
CI=4.87


[150-189]:
1dqza_PU5_150-189
CI=1.57


[190-266]:
1dqza_PU5_190-266
CI=3.60


[267-280 ]:
1dqza_PU5_267-280
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1dqza_PU6_1-24
CI=2.13


[25-72]:
1dqza_PU6_25-72
CI=3.80


[73-97]:
1dqza_PU6_73-97
CI=2.25


[98-113]:
1dqza_PU6_98-113
CI=0.81


[114-149]:
1dqza_PU6_114-149
CI=4.87


[150-170]:
1dqza_PU6_150-170
CI=0.44


[171-189]:
1dqza_PU6_171-189
CI=0.68


[190-266]:
1dqza_PU6_190-266
CI=3.60


[267-280 ]:
1dqza_PU6_267-280
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1dqza_PU7_1-24
CI=2.13


[25-72]:
1dqza_PU7_25-72
CI=3.80


[73-97]:
1dqza_PU7_73-97
CI=2.25


[98-113]:
1dqza_PU7_98-113
CI=0.81


[114-149]:
1dqza_PU7_114-149
CI=4.87


[150-170]:
1dqza_PU7_150-170
CI=0.44


[171-189]:
1dqza_PU7_171-189
CI=0.68


[190-208]:
1dqza_PU7_190-208
CI=0.09


[209-229]:
1dqza_PU7_209-229
CI=1.42


[230-266]:
1dqza_PU7_230-266
CI=0.45


[267-280 ]:
1dqza_PU7_267-280
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-24]:
1dqza_PU8_1-24
CI=2.13


[25-72]:
1dqza_PU8_25-72
CI=3.80


[73-97]:
1dqza_PU8_73-97
CI=2.25


[98-113]:
1dqza_PU8_98-113
CI=0.81


[114-149]:
1dqza_PU8_114-149
CI=4.87


[150-170]:
1dqza_PU8_150-170
CI=0.44


[171-189]:
1dqza_PU8_171-189
CI=0.68


[190-208]:
1dqza_PU8_190-208
CI=0.09


[209-229]:
1dqza_PU8_209-229
CI=1.42


[230-250]:
1dqza_PU8_230-250
CI=0.60


[251-266]:
1dqza_PU8_251-266
CI=0.22


[267-280 ]:
1dqza_PU8_267-280
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-24]:
1dqza_PU9_1-24
CI=2.13


[25-51]:
1dqza_PU9_25-51
CI=0.69


[52-72]:
1dqza_PU9_52-72
CI=0.36


[73-97]:
1dqza_PU9_73-97
CI=2.25


[98-113]:
1dqza_PU9_98-113
CI=0.81


[114-149]:
1dqza_PU9_114-149
CI=4.87


[150-170]:
1dqza_PU9_150-170
CI=0.44


[171-189]:
1dqza_PU9_171-189
CI=0.68


[190-208]:
1dqza_PU9_190-208
CI=0.09


[209-229]:
1dqza_PU9_209-229
CI=1.42


[230-250]:
1dqza_PU9_230-250
CI=0.60


[251-266]:
1dqza_PU9_251-266
CI=0.22


[267-280 ]:
1dqza_PU9_267-280
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-24]:
1dqza_PU_1-24
CI=2.13


[25-51]:
1dqza_PU_25-51
CI=0.69


[52-72]:
1dqza_PU_52-72
CI=0.36


[73-97]:
1dqza_PU_73-97
CI=2.25


[98-113]:
1dqza_PU_98-113
CI=0.81


[114-130]:
1dqza_PU_114-130
CI=1.28


[131-149]:
1dqza_PU_131-149
CI=0.58


[150-170]:
1dqza_PU_150-170
CI=0.44


[171-189]:
1dqza_PU_171-189
CI=0.68


[190-208]:
1dqza_PU_190-208
CI=0.09


[209-229]:
1dqza_PU_209-229
CI=1.42


[230-250]:
1dqza_PU_230-250
CI=0.60


[251-266]:
1dqza_PU_251-266
CI=0.22


[267-280 ]:
1dqza_PU_267-280
CI=0.00