Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-175]:
1ds1a_PU0_1-175
CI=2.24


[176-257]:
1ds1a_PU0_176-257
CI=2.54


[258-323 ]:
1ds1a_PU0_258-323
CI=0.23


Level 1
PU
Molecule needs Java 1.4 Structure


[1-175]:
1ds1a_PU1_1-175
CI=2.24


[176-257]:
1ds1a_PU1_176-257
CI=2.54


[258-299]:
1ds1a_PU1_258-299
CI=0.22


[300-323 ]:
1ds1a_PU1_300-323
CI=0.23


Level 2
PU
Molecule needs Java 1.4 Structure


[1-122]:
1ds1a_PU2_1-122
CI=2.32


[123-142]:
1ds1a_PU2_123-142
CI=1.96


[143-175]:
1ds1a_PU2_143-175
CI=0.41


[176-257]:
1ds1a_PU2_176-257
CI=2.54


[258-299]:
1ds1a_PU2_258-299
CI=0.22


[300-323 ]:
1ds1a_PU2_300-323
CI=0.23


Level 3
PU
Molecule needs Java 1.4 Structure


[1-122]:
1ds1a_PU3_1-122
CI=2.32


[123-142]:
1ds1a_PU3_123-142
CI=1.96


[143-175]:
1ds1a_PU3_143-175
CI=0.41


[176-257]:
1ds1a_PU3_176-257
CI=2.54


[258-281]:
1ds1a_PU3_258-281
CI=0.23


[282-299]:
1ds1a_PU3_282-299
CI=0.21


[300-323 ]:
1ds1a_PU3_300-323
CI=0.23


Level 4
PU
Molecule needs Java 1.4 Structure


[1-122]:
1ds1a_PU4_1-122
CI=2.32


[123-142]:
1ds1a_PU4_123-142
CI=1.96


[143-175]:
1ds1a_PU4_143-175
CI=0.41


[176-198]:
1ds1a_PU4_176-198
CI=0.08


[199-216]:
1ds1a_PU4_199-216
CI=0.41


[217-257]:
1ds1a_PU4_217-257
CI=0.93


[258-281]:
1ds1a_PU4_258-281
CI=0.23


[282-299]:
1ds1a_PU4_282-299
CI=0.21


[300-323 ]:
1ds1a_PU4_300-323
CI=0.23


Level 5
PU
Molecule needs Java 1.4 Structure


[1-122]:
1ds1a_PU5_1-122
CI=2.32


[123-142]:
1ds1a_PU5_123-142
CI=1.96


[143-175]:
1ds1a_PU5_143-175
CI=0.41


[176-198]:
1ds1a_PU5_176-198
CI=0.08


[199-216]:
1ds1a_PU5_199-216
CI=0.41


[217-236]:
1ds1a_PU5_217-236
CI=1.50


[237-257]:
1ds1a_PU5_237-257
CI=0.17


[258-281]:
1ds1a_PU5_258-281
CI=0.23


[282-299]:
1ds1a_PU5_282-299
CI=0.21


[300-323 ]:
1ds1a_PU5_300-323
CI=0.23


Level 6
PU
Molecule needs Java 1.4 Structure


[1-41]:
1ds1a_PU6_1-41
CI=0.74


[42-64]:
1ds1a_PU6_42-64
CI=0.31


[65-122]:
1ds1a_PU6_65-122
CI=1.25


[123-142]:
1ds1a_PU6_123-142
CI=1.96


[143-175]:
1ds1a_PU6_143-175
CI=0.41


[176-198]:
1ds1a_PU6_176-198
CI=0.08


[199-216]:
1ds1a_PU6_199-216
CI=0.41


[217-236]:
1ds1a_PU6_217-236
CI=1.50


[237-257]:
1ds1a_PU6_237-257
CI=0.17


[258-281]:
1ds1a_PU6_258-281
CI=0.23


[282-299]:
1ds1a_PU6_282-299
CI=0.21


[300-323 ]:
1ds1a_PU6_300-323
CI=0.23


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ds1a_PU7_1-17
CI=0.00


[18-41]:
1ds1a_PU7_18-41
CI=1.16


[42-64]:
1ds1a_PU7_42-64
CI=0.31


[65-122]:
1ds1a_PU7_65-122
CI=1.25


[123-142]:
1ds1a_PU7_123-142
CI=1.96


[143-175]:
1ds1a_PU7_143-175
CI=0.41


[176-198]:
1ds1a_PU7_176-198
CI=0.08


[199-216]:
1ds1a_PU7_199-216
CI=0.41


[217-236]:
1ds1a_PU7_217-236
CI=1.50


[237-257]:
1ds1a_PU7_237-257
CI=0.17


[258-281]:
1ds1a_PU7_258-281
CI=0.23


[282-299]:
1ds1a_PU7_282-299
CI=0.21


[300-323 ]:
1ds1a_PU7_300-323
CI=0.23


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ds1a_PU8_1-17
CI=0.00


[18-41]:
1ds1a_PU8_18-41
CI=1.16


[42-64]:
1ds1a_PU8_42-64
CI=0.31


[65-81]:
1ds1a_PU8_65-81
CI=0.00


[82-122]:
1ds1a_PU8_82-122
CI=1.30


[123-142]:
1ds1a_PU8_123-142
CI=1.96


[143-175]:
1ds1a_PU8_143-175
CI=0.41


[176-198]:
1ds1a_PU8_176-198
CI=0.08


[199-216]:
1ds1a_PU8_199-216
CI=0.41


[217-236]:
1ds1a_PU8_217-236
CI=1.50


[237-257]:
1ds1a_PU8_237-257
CI=0.17


[258-281]:
1ds1a_PU8_258-281
CI=0.23


[282-299]:
1ds1a_PU8_282-299
CI=0.21


[300-323 ]:
1ds1a_PU8_300-323
CI=0.23


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ds1a_PU_1-17
CI=0.00


[18-41]:
1ds1a_PU_18-41
CI=1.16


[42-64]:
1ds1a_PU_42-64
CI=0.31


[65-81]:
1ds1a_PU_65-81
CI=0.00


[82-104]:
1ds1a_PU_82-104
CI=0.00


[105-122]:
1ds1a_PU_105-122
CI=1.44


[123-142]:
1ds1a_PU_123-142
CI=1.96


[143-175]:
1ds1a_PU_143-175
CI=0.41


[176-198]:
1ds1a_PU_176-198
CI=0.08


[199-216]:
1ds1a_PU_199-216
CI=0.41


[217-236]:
1ds1a_PU_217-236
CI=1.50


[237-257]:
1ds1a_PU_237-257
CI=0.17


[258-281]:
1ds1a_PU_258-281
CI=0.23


[282-299]:
1ds1a_PU_282-299
CI=0.21


[300-323 ]:
1ds1a_PU_300-323
CI=0.23