Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-120]:
1dtdb_PU0_1-120
CI=3.28


[121-272]:
1dtdb_PU0_121-272
CI=4.45


[273-303 ]:
1dtdb_PU0_273-303
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-120]:
1dtdb_PU1_1-120
CI=3.28


[121-181]:
1dtdb_PU1_121-181
CI=3.20


[182-272]:
1dtdb_PU1_182-272
CI=4.00


[273-303 ]:
1dtdb_PU1_273-303
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-77]:
1dtdb_PU2_1-77
CI=1.77


[78-95]:
1dtdb_PU2_78-95
CI=0.81


[96-120]:
1dtdb_PU2_96-120
CI=0.66


[121-181]:
1dtdb_PU2_121-181
CI=3.20


[182-272]:
1dtdb_PU2_182-272
CI=4.00


[273-303 ]:
1dtdb_PU2_273-303
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU3_1-16
CI=0.11


[17-57]:
1dtdb_PU3_17-57
CI=1.96


[58-77]:
1dtdb_PU3_58-77
CI=1.27


[78-95]:
1dtdb_PU3_78-95
CI=0.81


[96-120]:
1dtdb_PU3_96-120
CI=0.66


[121-181]:
1dtdb_PU3_121-181
CI=3.20


[182-272]:
1dtdb_PU3_182-272
CI=4.00


[273-303 ]:
1dtdb_PU3_273-303
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU4_1-16
CI=0.11


[17-57]:
1dtdb_PU4_17-57
CI=1.96


[58-77]:
1dtdb_PU4_58-77
CI=1.27


[78-95]:
1dtdb_PU4_78-95
CI=0.81


[96-120]:
1dtdb_PU4_96-120
CI=0.66


[121-164]:
1dtdb_PU4_121-164
CI=3.60


[165-181]:
1dtdb_PU4_165-181
CI=0.32


[182-272]:
1dtdb_PU4_182-272
CI=4.00


[273-303 ]:
1dtdb_PU4_273-303
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU5_1-16
CI=0.11


[17-57]:
1dtdb_PU5_17-57
CI=1.96


[58-77]:
1dtdb_PU5_58-77
CI=1.27


[78-95]:
1dtdb_PU5_78-95
CI=0.81


[96-120]:
1dtdb_PU5_96-120
CI=0.66


[121-164]:
1dtdb_PU5_121-164
CI=3.60


[165-181]:
1dtdb_PU5_165-181
CI=0.32


[182-214]:
1dtdb_PU5_182-214
CI=0.34


[215-231]:
1dtdb_PU5_215-231
CI=0.43


[232-272]:
1dtdb_PU5_232-272
CI=0.69


[273-303 ]:
1dtdb_PU5_273-303
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU6_1-16
CI=0.11


[17-57]:
1dtdb_PU6_17-57
CI=1.96


[58-77]:
1dtdb_PU6_58-77
CI=1.27


[78-95]:
1dtdb_PU6_78-95
CI=0.81


[96-120]:
1dtdb_PU6_96-120
CI=0.66


[121-164]:
1dtdb_PU6_121-164
CI=3.60


[165-181]:
1dtdb_PU6_165-181
CI=0.32


[182-198]:
1dtdb_PU6_182-198
CI=0.00


[199-214]:
1dtdb_PU6_199-214
CI=0.34


[215-231]:
1dtdb_PU6_215-231
CI=0.43


[232-272]:
1dtdb_PU6_232-272
CI=0.69


[273-303 ]:
1dtdb_PU6_273-303
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU7_1-16
CI=0.11


[17-57]:
1dtdb_PU7_17-57
CI=1.96


[58-77]:
1dtdb_PU7_58-77
CI=1.27


[78-95]:
1dtdb_PU7_78-95
CI=0.81


[96-120]:
1dtdb_PU7_96-120
CI=0.66


[121-164]:
1dtdb_PU7_121-164
CI=3.60


[165-181]:
1dtdb_PU7_165-181
CI=0.32


[182-198]:
1dtdb_PU7_182-198
CI=0.00


[199-214]:
1dtdb_PU7_199-214
CI=0.34


[215-231]:
1dtdb_PU7_215-231
CI=0.43


[232-256]:
1dtdb_PU7_232-256
CI=0.37


[257-272]:
1dtdb_PU7_257-272
CI=0.00


[273-303 ]:
1dtdb_PU7_273-303
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU8_1-16
CI=0.11


[17-57]:
1dtdb_PU8_17-57
CI=1.96


[58-77]:
1dtdb_PU8_58-77
CI=1.27


[78-95]:
1dtdb_PU8_78-95
CI=0.81


[96-120]:
1dtdb_PU8_96-120
CI=0.66


[121-138]:
1dtdb_PU8_121-138
CI=2.48


[139-164]:
1dtdb_PU8_139-164
CI=2.24


[165-181]:
1dtdb_PU8_165-181
CI=0.32


[182-198]:
1dtdb_PU8_182-198
CI=0.00


[199-214]:
1dtdb_PU8_199-214
CI=0.34


[215-231]:
1dtdb_PU8_215-231
CI=0.43


[232-256]:
1dtdb_PU8_232-256
CI=0.37


[257-272]:
1dtdb_PU8_257-272
CI=0.00


[273-303 ]:
1dtdb_PU8_273-303
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1dtdb_PU_1-16
CI=0.11


[17-33]:
1dtdb_PU_17-33
CI=0.43


[34-57]:
1dtdb_PU_34-57
CI=0.31


[58-77]:
1dtdb_PU_58-77
CI=1.27


[78-95]:
1dtdb_PU_78-95
CI=0.81


[96-120]:
1dtdb_PU_96-120
CI=0.66


[121-138]:
1dtdb_PU_121-138
CI=2.48


[139-164]:
1dtdb_PU_139-164
CI=2.24


[165-181]:
1dtdb_PU_165-181
CI=0.32


[182-198]:
1dtdb_PU_182-198
CI=0.00


[199-214]:
1dtdb_PU_199-214
CI=0.34


[215-231]:
1dtdb_PU_215-231
CI=0.43


[232-256]:
1dtdb_PU_232-256
CI=0.37


[257-272]:
1dtdb_PU_257-272
CI=0.00


[273-303 ]:
1dtdb_PU_273-303
CI=0.00