Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-139]:
1duvg_PU0_1-139
CI=3.10


[140-316]:
1duvg_PU0_140-316
CI=4.13


[317-333 ]:
1duvg_PU0_317-333
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU1_1-16
CI=0.11


[17-39]:
1duvg_PU1_17-39
CI=0.24


[40-139]:
1duvg_PU1_40-139
CI=3.49


[140-316]:
1duvg_PU1_140-316
CI=4.13


[317-333 ]:
1duvg_PU1_317-333
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU2_1-16
CI=0.11


[17-39]:
1duvg_PU2_17-39
CI=0.24


[40-139]:
1duvg_PU2_40-139
CI=3.49


[140-275]:
1duvg_PU2_140-275
CI=3.89


[276-307]:
1duvg_PU2_276-307
CI=2.42


[308-316]:
1duvg_PU2_308-316
CI=0.00


[317-333 ]:
1duvg_PU2_317-333
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU3_1-16
CI=0.11


[17-39]:
1duvg_PU3_17-39
CI=0.24


[40-139]:
1duvg_PU3_40-139
CI=3.49


[140-232]:
1duvg_PU3_140-232
CI=4.04


[233-252]:
1duvg_PU3_233-252
CI=0.73


[253-275]:
1duvg_PU3_253-275
CI=0.08


[276-307]:
1duvg_PU3_276-307
CI=2.42


[308-316]:
1duvg_PU3_308-316
CI=0.00


[317-333 ]:
1duvg_PU3_317-333
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU4_1-16
CI=0.11


[17-39]:
1duvg_PU4_17-39
CI=0.24


[40-87]:
1duvg_PU4_40-87
CI=2.44


[88-139]:
1duvg_PU4_88-139
CI=2.73


[140-232]:
1duvg_PU4_140-232
CI=4.04


[233-252]:
1duvg_PU4_233-252
CI=0.73


[253-275]:
1duvg_PU4_253-275
CI=0.08


[276-307]:
1duvg_PU4_276-307
CI=2.42


[308-316]:
1duvg_PU4_308-316
CI=0.00


[317-333 ]:
1duvg_PU4_317-333
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU5_1-16
CI=0.11


[17-39]:
1duvg_PU5_17-39
CI=0.24


[40-87]:
1duvg_PU5_40-87
CI=2.44


[88-139]:
1duvg_PU5_88-139
CI=2.73


[140-161]:
1duvg_PU5_140-161
CI=0.25


[162-216]:
1duvg_PU5_162-216
CI=3.80


[217-232]:
1duvg_PU5_217-232
CI=0.00


[233-252]:
1duvg_PU5_233-252
CI=0.73


[253-275]:
1duvg_PU5_253-275
CI=0.08


[276-307]:
1duvg_PU5_276-307
CI=2.42


[308-316]:
1duvg_PU5_308-316
CI=0.00


[317-333 ]:
1duvg_PU5_317-333
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU6_1-16
CI=0.11


[17-39]:
1duvg_PU6_17-39
CI=0.24


[40-87]:
1duvg_PU6_40-87
CI=2.44


[88-122]:
1duvg_PU6_88-122
CI=1.40


[123-139]:
1duvg_PU6_123-139
CI=1.20


[140-161]:
1duvg_PU6_140-161
CI=0.25


[162-216]:
1duvg_PU6_162-216
CI=3.80


[217-232]:
1duvg_PU6_217-232
CI=0.00


[233-252]:
1duvg_PU6_233-252
CI=0.73


[253-275]:
1duvg_PU6_253-275
CI=0.08


[276-307]:
1duvg_PU6_276-307
CI=2.42


[308-316]:
1duvg_PU6_308-316
CI=0.00


[317-333 ]:
1duvg_PU6_317-333
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-16]:
1duvg_PU_1-16
CI=0.11


[17-39]:
1duvg_PU_17-39
CI=0.24


[40-87]:
1duvg_PU_40-87
CI=2.44


[88-105]:
1duvg_PU_88-105
CI=0.00


[106-122]:
1duvg_PU_106-122
CI=0.00


[123-139]:
1duvg_PU_123-139
CI=1.20


[140-161]:
1duvg_PU_140-161
CI=0.25


[162-216]:
1duvg_PU_162-216
CI=3.80


[217-232]:
1duvg_PU_217-232
CI=0.00


[233-252]:
1duvg_PU_233-252
CI=0.73


[253-275]:
1duvg_PU_253-275
CI=0.08


[276-307]:
1duvg_PU_276-307
CI=2.42


[308-316]:
1duvg_PU_308-316
CI=0.00


[317-333 ]:
1duvg_PU_317-333
CI=0.00