Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-237]:
1dxea_PU0_1-237
CI=4.65


[238-253 ]:
1dxea_PU0_238-253
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-72]:
1dxea_PU1_1-72
CI=3.20


[73-212]:
1dxea_PU1_73-212
CI=3.92


[213-237]:
1dxea_PU1_213-237
CI=1.58


[238-253 ]:
1dxea_PU1_238-253
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-72]:
1dxea_PU2_1-72
CI=3.20


[73-120]:
1dxea_PU2_73-120
CI=2.15


[121-139]:
1dxea_PU2_121-139
CI=0.87


[140-212]:
1dxea_PU2_140-212
CI=3.09


[213-237]:
1dxea_PU2_213-237
CI=1.58


[238-253 ]:
1dxea_PU2_238-253
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dxea_PU3_1-21
CI=0.25


[22-72]:
1dxea_PU3_22-72
CI=3.41


[73-120]:
1dxea_PU3_73-120
CI=2.15


[121-139]:
1dxea_PU3_121-139
CI=0.87


[140-212]:
1dxea_PU3_140-212
CI=3.09


[213-237]:
1dxea_PU3_213-237
CI=1.58


[238-253 ]:
1dxea_PU3_238-253
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dxea_PU4_1-21
CI=0.25


[22-72]:
1dxea_PU4_22-72
CI=3.41


[73-96]:
1dxea_PU4_73-96
CI=1.18


[97-120]:
1dxea_PU4_97-120
CI=1.41


[121-139]:
1dxea_PU4_121-139
CI=0.87


[140-212]:
1dxea_PU4_140-212
CI=3.09


[213-237]:
1dxea_PU4_213-237
CI=1.58


[238-253 ]:
1dxea_PU4_238-253
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dxea_PU5_1-21
CI=0.25


[22-72]:
1dxea_PU5_22-72
CI=3.41


[73-96]:
1dxea_PU5_73-96
CI=1.18


[97-120]:
1dxea_PU5_97-120
CI=1.41


[121-139]:
1dxea_PU5_121-139
CI=0.87


[140-171]:
1dxea_PU5_140-171
CI=1.66


[172-212]:
1dxea_PU5_172-212
CI=1.66


[213-237]:
1dxea_PU5_213-237
CI=1.58


[238-253 ]:
1dxea_PU5_238-253
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dxea_PU6_1-21
CI=0.25


[22-72]:
1dxea_PU6_22-72
CI=3.41


[73-96]:
1dxea_PU6_73-96
CI=1.18


[97-120]:
1dxea_PU6_97-120
CI=1.41


[121-139]:
1dxea_PU6_121-139
CI=0.87


[140-171]:
1dxea_PU6_140-171
CI=1.66


[172-196]:
1dxea_PU6_172-196
CI=1.71


[197-212]:
1dxea_PU6_197-212
CI=0.80


[213-237]:
1dxea_PU6_213-237
CI=1.58


[238-253 ]:
1dxea_PU6_238-253
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1dxea_PU7_1-21
CI=0.25


[22-38]:
1dxea_PU7_22-38
CI=0.32


[39-72]:
1dxea_PU7_39-72
CI=1.90


[73-96]:
1dxea_PU7_73-96
CI=1.18


[97-120]:
1dxea_PU7_97-120
CI=1.41


[121-139]:
1dxea_PU7_121-139
CI=0.87


[140-171]:
1dxea_PU7_140-171
CI=1.66


[172-196]:
1dxea_PU7_172-196
CI=1.71


[197-212]:
1dxea_PU7_197-212
CI=0.80


[213-237]:
1dxea_PU7_213-237
CI=1.58


[238-253 ]:
1dxea_PU7_238-253
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-21]:
1dxea_PU_1-21
CI=0.25


[22-38]:
1dxea_PU_22-38
CI=0.32


[39-55]:
1dxea_PU_39-55
CI=0.53


[56-72]:
1dxea_PU_56-72
CI=0.21


[73-96]:
1dxea_PU_73-96
CI=1.18


[97-120]:
1dxea_PU_97-120
CI=1.41


[121-139]:
1dxea_PU_121-139
CI=0.87


[140-171]:
1dxea_PU_140-171
CI=1.66


[172-196]:
1dxea_PU_172-196
CI=1.71


[197-212]:
1dxea_PU_197-212
CI=0.80


[213-237]:
1dxea_PU_213-237
CI=1.58


[238-253 ]:
1dxea_PU_238-253
CI=0.00