Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-49]:
1dy5a_PU0_1-49
CI=1.55


[50-76]:
1dy5a_PU0_50-76
CI=2.19


[77-123 ]:
1dy5a_PU0_77-123
CI=3.40


Level 1
PU
Molecule needs Java 1.4 Structure


[1-49]:
1dy5a_PU1_1-49
CI=1.55


[50-76]:
1dy5a_PU1_50-76
CI=2.19


[77-104]:
1dy5a_PU1_77-104
CI=3.18


[105-123 ]:
1dy5a_PU1_105-123
CI=2.76


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1dy5a_PU_1-17
CI=0.10


[18-49]:
1dy5a_PU_18-49
CI=0.64


[50-76]:
1dy5a_PU_50-76
CI=2.19


[77-104]:
1dy5a_PU_77-104
CI=3.18


[105-123 ]:
1dy5a_PU_105-123
CI=2.76