Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-192]:
1dyka_PU0_1-192
CI=5.89


[193-374 ]:
1dyka_PU0_193-374
CI=6.01


Level 1
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU1_1-31
CI=0.24


[32-135]:
1dyka_PU1_32-135
CI=5.37


[136-192]:
1dyka_PU1_136-192
CI=1.07


[193-374 ]:
1dyka_PU1_193-374
CI=6.01


Level 2
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU2_1-31
CI=0.24


[32-135]:
1dyka_PU2_32-135
CI=5.37


[136-159]:
1dyka_PU2_136-159
CI=0.78


[160-192]:
1dyka_PU2_160-192
CI=0.68


[193-374 ]:
1dyka_PU2_193-374
CI=6.01


Level 3
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU3_1-31
CI=0.24


[32-135]:
1dyka_PU3_32-135
CI=5.37


[136-159]:
1dyka_PU3_136-159
CI=0.78


[160-192]:
1dyka_PU3_160-192
CI=0.68


[193-246]:
1dyka_PU3_193-246
CI=1.21


[247-310]:
1dyka_PU3_247-310
CI=3.28


[311-374 ]:
1dyka_PU3_311-374
CI=1.23


Level 4
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU4_1-31
CI=0.24


[32-135]:
1dyka_PU4_32-135
CI=5.37


[136-159]:
1dyka_PU4_136-159
CI=0.78


[160-192]:
1dyka_PU4_160-192
CI=0.68


[193-246]:
1dyka_PU4_193-246
CI=1.21


[247-310]:
1dyka_PU4_247-310
CI=3.28


[311-337]:
1dyka_PU4_311-337
CI=0.84


[338-374 ]:
1dyka_PU4_338-374
CI=1.39


Level 5
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU5_1-31
CI=0.24


[32-135]:
1dyka_PU5_32-135
CI=5.37


[136-159]:
1dyka_PU5_136-159
CI=0.78


[160-192]:
1dyka_PU5_160-192
CI=0.68


[193-209]:
1dyka_PU5_193-209
CI=0.00


[210-246]:
1dyka_PU5_210-246
CI=1.66


[247-310]:
1dyka_PU5_247-310
CI=3.28


[311-337]:
1dyka_PU5_311-337
CI=0.84


[338-374 ]:
1dyka_PU5_338-374
CI=1.39


Level 6
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU6_1-31
CI=0.24


[32-135]:
1dyka_PU6_32-135
CI=5.37


[136-159]:
1dyka_PU6_136-159
CI=0.78


[160-192]:
1dyka_PU6_160-192
CI=0.68


[193-209]:
1dyka_PU6_193-209
CI=0.00


[210-246]:
1dyka_PU6_210-246
CI=1.66


[247-310]:
1dyka_PU6_247-310
CI=3.28


[311-337]:
1dyka_PU6_311-337
CI=0.84


[338-356]:
1dyka_PU6_338-356
CI=1.38


[357-374 ]:
1dyka_PU6_357-374
CI=1.03


Level 7
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU7_1-31
CI=0.24


[32-135]:
1dyka_PU7_32-135
CI=5.37


[136-159]:
1dyka_PU7_136-159
CI=0.78


[160-192]:
1dyka_PU7_160-192
CI=0.68


[193-209]:
1dyka_PU7_193-209
CI=0.00


[210-226]:
1dyka_PU7_210-226
CI=0.00


[227-246]:
1dyka_PU7_227-246
CI=2.44


[247-310]:
1dyka_PU7_247-310
CI=3.28


[311-337]:
1dyka_PU7_311-337
CI=0.84


[338-356]:
1dyka_PU7_338-356
CI=1.38


[357-374 ]:
1dyka_PU7_357-374
CI=1.03


Level 8
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU8_1-31
CI=0.24


[32-135]:
1dyka_PU8_32-135
CI=5.37


[136-159]:
1dyka_PU8_136-159
CI=0.78


[160-176]:
1dyka_PU8_160-176
CI=0.87


[177-192]:
1dyka_PU8_177-192
CI=0.00


[193-209]:
1dyka_PU8_193-209
CI=0.00


[210-226]:
1dyka_PU8_210-226
CI=0.00


[227-246]:
1dyka_PU8_227-246
CI=2.44


[247-310]:
1dyka_PU8_247-310
CI=3.28


[311-337]:
1dyka_PU8_311-337
CI=0.84


[338-356]:
1dyka_PU8_338-356
CI=1.38


[357-374 ]:
1dyka_PU8_357-374
CI=1.03


Level 9
PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU9_1-31
CI=0.24


[32-135]:
1dyka_PU9_32-135
CI=5.37


[136-159]:
1dyka_PU9_136-159
CI=0.78


[160-176]:
1dyka_PU9_160-176
CI=0.87


[177-192]:
1dyka_PU9_177-192
CI=0.00


[193-209]:
1dyka_PU9_193-209
CI=0.00


[210-226]:
1dyka_PU9_210-226
CI=0.00


[227-246]:
1dyka_PU9_227-246
CI=2.44


[247-277]:
1dyka_PU9_247-277
CI=1.84


[278-310]:
1dyka_PU9_278-310
CI=2.72


[311-337]:
1dyka_PU9_311-337
CI=0.84


[338-356]:
1dyka_PU9_338-356
CI=1.38


[357-374 ]:
1dyka_PU9_357-374
CI=1.03


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-31]:
1dyka_PU_1-31
CI=0.24


[32-47]:
1dyka_PU_32-47
CI=0.00


[48-99]:
1dyka_PU_48-99
CI=4.34


[100-135]:
1dyka_PU_100-135
CI=2.39


[136-159]:
1dyka_PU_136-159
CI=0.78


[160-176]:
1dyka_PU_160-176
CI=0.87


[177-192]:
1dyka_PU_177-192
CI=0.00


[193-209]:
1dyka_PU_193-209
CI=0.00


[210-226]:
1dyka_PU_210-226
CI=0.00


[227-246]:
1dyka_PU_227-246
CI=2.44


[247-277]:
1dyka_PU_247-277
CI=1.84


[278-310]:
1dyka_PU_278-310
CI=2.72


[311-337]:
1dyka_PU_311-337
CI=0.84


[338-356]:
1dyka_PU_338-356
CI=1.38


[357-374 ]:
1dyka_PU_357-374
CI=1.03