Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-92]:
1dypa_PU0_1-92
CI=3.52


[93-223]:
1dypa_PU0_93-223
CI=5.36


[224-266 ]:
1dypa_PU0_224-266
CI=0.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU1_1-19
CI=0.57


[20-92]:
1dypa_PU1_20-92
CI=4.09


[93-223]:
1dypa_PU1_93-223
CI=5.36


[224-266 ]:
1dypa_PU1_224-266
CI=0.98


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU2_1-19
CI=0.57


[20-92]:
1dypa_PU2_20-92
CI=4.09


[93-223]:
1dypa_PU2_93-223
CI=5.36


[224-247]:
1dypa_PU2_224-247
CI=1.49


[248-266 ]:
1dypa_PU2_248-266
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU3_1-19
CI=0.57


[20-92]:
1dypa_PU3_20-92
CI=4.09


[93-108]:
1dypa_PU3_93-108
CI=0.00


[109-185]:
1dypa_PU3_109-185
CI=4.61


[186-223]:
1dypa_PU3_186-223
CI=2.53


[224-247]:
1dypa_PU3_224-247
CI=1.49


[248-266 ]:
1dypa_PU3_248-266
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU4_1-19
CI=0.57


[20-51]:
1dypa_PU4_20-51
CI=1.24


[52-84]:
1dypa_PU4_52-84
CI=2.72


[85-92]:
1dypa_PU4_85-92
CI=0.00


[93-108]:
1dypa_PU4_93-108
CI=0.00


[109-185]:
1dypa_PU4_109-185
CI=4.61


[186-223]:
1dypa_PU4_186-223
CI=2.53


[224-247]:
1dypa_PU4_224-247
CI=1.49


[248-266 ]:
1dypa_PU4_248-266
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU5_1-19
CI=0.57


[20-51]:
1dypa_PU5_20-51
CI=1.24


[52-84]:
1dypa_PU5_52-84
CI=2.72


[85-92]:
1dypa_PU5_85-92
CI=0.00


[93-108]:
1dypa_PU5_93-108
CI=0.00


[109-166]:
1dypa_PU5_109-166
CI=4.29


[167-185]:
1dypa_PU5_167-185
CI=0.79


[186-223]:
1dypa_PU5_186-223
CI=2.53


[224-247]:
1dypa_PU5_224-247
CI=1.49


[248-266 ]:
1dypa_PU5_248-266
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU6_1-19
CI=0.57


[20-51]:
1dypa_PU6_20-51
CI=1.24


[52-84]:
1dypa_PU6_52-84
CI=2.72


[85-92]:
1dypa_PU6_85-92
CI=0.00


[93-108]:
1dypa_PU6_93-108
CI=0.00


[109-166]:
1dypa_PU6_109-166
CI=4.29


[167-185]:
1dypa_PU6_167-185
CI=0.79


[186-207]:
1dypa_PU6_186-207
CI=2.13


[208-223]:
1dypa_PU6_208-223
CI=0.00


[224-247]:
1dypa_PU6_224-247
CI=1.49


[248-266 ]:
1dypa_PU6_248-266
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU7_1-19
CI=0.57


[20-51]:
1dypa_PU7_20-51
CI=1.24


[52-84]:
1dypa_PU7_52-84
CI=2.72


[85-92]:
1dypa_PU7_85-92
CI=0.00


[93-108]:
1dypa_PU7_93-108
CI=0.00


[109-149]:
1dypa_PU7_109-149
CI=2.71


[150-166]:
1dypa_PU7_150-166
CI=0.99


[167-185]:
1dypa_PU7_167-185
CI=0.79


[186-207]:
1dypa_PU7_186-207
CI=2.13


[208-223]:
1dypa_PU7_208-223
CI=0.00


[224-247]:
1dypa_PU7_224-247
CI=1.49


[248-266 ]:
1dypa_PU7_248-266
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU8_1-19
CI=0.57


[20-51]:
1dypa_PU8_20-51
CI=1.24


[52-84]:
1dypa_PU8_52-84
CI=2.72


[85-92]:
1dypa_PU8_85-92
CI=0.00


[93-108]:
1dypa_PU8_93-108
CI=0.00


[109-131]:
1dypa_PU8_109-131
CI=0.08


[132-149]:
1dypa_PU8_132-149
CI=0.42


[150-166]:
1dypa_PU8_150-166
CI=0.99


[167-185]:
1dypa_PU8_167-185
CI=0.79


[186-207]:
1dypa_PU8_186-207
CI=2.13


[208-223]:
1dypa_PU8_208-223
CI=0.00


[224-247]:
1dypa_PU8_224-247
CI=1.49


[248-266 ]:
1dypa_PU8_248-266
CI=0.00


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1dypa_PU_1-19
CI=0.57


[20-51]:
1dypa_PU_20-51
CI=1.24


[52-68]:
1dypa_PU_52-68
CI=0.00


[69-84]:
1dypa_PU_69-84
CI=0.34


[85-92]:
1dypa_PU_85-92
CI=0.00


[93-108]:
1dypa_PU_93-108
CI=0.00


[109-131]:
1dypa_PU_109-131
CI=0.08


[132-149]:
1dypa_PU_132-149
CI=0.42


[150-166]:
1dypa_PU_150-166
CI=0.99


[167-185]:
1dypa_PU_167-185
CI=0.79


[186-207]:
1dypa_PU_186-207
CI=2.13


[208-223]:
1dypa_PU_208-223
CI=0.00


[224-247]:
1dypa_PU_224-247
CI=1.49


[248-266 ]:
1dypa_PU_248-266
CI=0.00