Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1dyta_PU0_1-56
CI=1.67


[57-72]:
1dyta_PU0_57-72
CI=2.34


[73-133 ]:
1dyta_PU0_73-133
CI=3.27


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1dyta_PU1_1-56
CI=1.67


[57-72]:
1dyta_PU1_57-72
CI=2.34


[73-105]:
1dyta_PU1_73-105
CI=2.49


[106-133 ]:
1dyta_PU1_106-133
CI=2.85


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1dyta_PU2_1-38
CI=0.84


[39-56]:
1dyta_PU2_39-56
CI=0.00


[57-72]:
1dyta_PU2_57-72
CI=2.34


[73-105]:
1dyta_PU2_73-105
CI=2.49


[106-133 ]:
1dyta_PU2_106-133
CI=2.85


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1dyta_PU3_1-18
CI=0.31


[19-38]:
1dyta_PU3_19-38
CI=0.46


[39-56]:
1dyta_PU3_39-56
CI=0.00


[57-72]:
1dyta_PU3_57-72
CI=2.34


[73-105]:
1dyta_PU3_73-105
CI=2.49


[106-133 ]:
1dyta_PU3_106-133
CI=2.85


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-18]:
1dyta_PU_1-18
CI=0.31


[19-38]:
1dyta_PU_19-38
CI=0.46


[39-56]:
1dyta_PU_39-56
CI=0.00


[57-72]:
1dyta_PU_57-72
CI=2.34


[73-89]:
1dyta_PU_73-89
CI=0.00


[90-105]:
1dyta_PU_90-105
CI=0.12


[106-133 ]:
1dyta_PU_106-133
CI=2.85