Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1dzoa_PU0_1-17
CI=0.00


[18-51]:
1dzoa_PU0_18-51
CI=2.53


[52-120 ]:
1dzoa_PU0_52-120
CI=3.98


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1dzoa_PU1_1-17
CI=0.00


[18-51]:
1dzoa_PU1_18-51
CI=2.53


[52-101]:
1dzoa_PU1_52-101
CI=3.58


[102-120 ]:
1dzoa_PU1_102-120
CI=1.56


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1dzoa_PU2_1-17
CI=0.00


[18-34]:
1dzoa_PU2_18-34
CI=0.44


[35-51]:
1dzoa_PU2_35-51
CI=2.09


[52-101]:
1dzoa_PU2_52-101
CI=3.58


[102-120 ]:
1dzoa_PU2_102-120
CI=1.56


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-17]:
1dzoa_PU_1-17
CI=0.00


[18-34]:
1dzoa_PU_18-34
CI=0.44


[35-51]:
1dzoa_PU_35-51
CI=2.09


[52-78]:
1dzoa_PU_52-78
CI=2.10


[79-101]:
1dzoa_PU_79-101
CI=1.30


[102-120 ]:
1dzoa_PU_102-120
CI=1.56