Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1e0ba_PU0_1-41
CI=2.57


[42-61 ]:
1e0ba_PU0_42-61
CI=0.28


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-19]:
1e0ba_PU_1-19
CI=0.00


[20-41]:
1e0ba_PU_20-41
CI=1.80


[42-61 ]:
1e0ba_PU_42-61
CI=0.28