Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-147]:
1e0ca_PU0_1-147
CI=3.85


[148-270 ]:
1e0ca_PU0_148-270
CI=4.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-147]:
1e0ca_PU1_1-147
CI=3.85


[148-192]:
1e0ca_PU1_148-192
CI=1.95


[193-221]:
1e0ca_PU1_193-221
CI=0.98


[222-270 ]:
1e0ca_PU1_222-270
CI=2.96


Level 2
PU
Molecule needs Java 1.4 Structure


[1-147]:
1e0ca_PU2_1-147
CI=3.85


[148-192]:
1e0ca_PU2_148-192
CI=1.95


[193-221]:
1e0ca_PU2_193-221
CI=0.98


[222-254]:
1e0ca_PU2_222-254
CI=3.21


[255-270 ]:
1e0ca_PU2_255-270
CI=0.44


Level 3
PU
Molecule needs Java 1.4 Structure


[1-147]:
1e0ca_PU3_1-147
CI=3.85


[148-166]:
1e0ca_PU3_148-166
CI=0.00


[167-192]:
1e0ca_PU3_167-192
CI=1.94


[193-221]:
1e0ca_PU3_193-221
CI=0.98


[222-254]:
1e0ca_PU3_222-254
CI=3.21


[255-270 ]:
1e0ca_PU3_255-270
CI=0.44


Level 4
PU
Molecule needs Java 1.4 Structure


[1-52]:
1e0ca_PU4_1-52
CI=1.64


[53-68]:
1e0ca_PU4_53-68
CI=1.73


[69-147]:
1e0ca_PU4_69-147
CI=2.67


[148-166]:
1e0ca_PU4_148-166
CI=0.00


[167-192]:
1e0ca_PU4_167-192
CI=1.94


[193-221]:
1e0ca_PU4_193-221
CI=0.98


[222-254]:
1e0ca_PU4_222-254
CI=3.21


[255-270 ]:
1e0ca_PU4_255-270
CI=0.44


Level 5
PU
Molecule needs Java 1.4 Structure


[1-23]:
1e0ca_PU5_1-23
CI=0.55


[24-52]:
1e0ca_PU5_24-52
CI=2.26


[53-68]:
1e0ca_PU5_53-68
CI=1.73


[69-147]:
1e0ca_PU5_69-147
CI=2.67


[148-166]:
1e0ca_PU5_148-166
CI=0.00


[167-192]:
1e0ca_PU5_167-192
CI=1.94


[193-221]:
1e0ca_PU5_193-221
CI=0.98


[222-254]:
1e0ca_PU5_222-254
CI=3.21


[255-270 ]:
1e0ca_PU5_255-270
CI=0.44


Level 6
PU
Molecule needs Java 1.4 Structure


[1-23]:
1e0ca_PU6_1-23
CI=0.55


[24-52]:
1e0ca_PU6_24-52
CI=2.26


[53-68]:
1e0ca_PU6_53-68
CI=1.73


[69-87]:
1e0ca_PU6_69-87
CI=0.00


[88-127]:
1e0ca_PU6_88-127
CI=1.44


[128-147]:
1e0ca_PU6_128-147
CI=0.00


[148-166]:
1e0ca_PU6_148-166
CI=0.00


[167-192]:
1e0ca_PU6_167-192
CI=1.94


[193-221]:
1e0ca_PU6_193-221
CI=0.98


[222-254]:
1e0ca_PU6_222-254
CI=3.21


[255-270 ]:
1e0ca_PU6_255-270
CI=0.44


Level 7
PU
Molecule needs Java 1.4 Structure


[1-23]:
1e0ca_PU7_1-23
CI=0.55


[24-52]:
1e0ca_PU7_24-52
CI=2.26


[53-68]:
1e0ca_PU7_53-68
CI=1.73


[69-87]:
1e0ca_PU7_69-87
CI=0.00


[88-108]:
1e0ca_PU7_88-108
CI=0.26


[109-127]:
1e0ca_PU7_109-127
CI=0.18


[128-147]:
1e0ca_PU7_128-147
CI=0.00


[148-166]:
1e0ca_PU7_148-166
CI=0.00


[167-192]:
1e0ca_PU7_167-192
CI=1.94


[193-221]:
1e0ca_PU7_193-221
CI=0.98


[222-254]:
1e0ca_PU7_222-254
CI=3.21


[255-270 ]:
1e0ca_PU7_255-270
CI=0.44


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-23]:
1e0ca_PU_1-23
CI=0.55


[24-52]:
1e0ca_PU_24-52
CI=2.26


[53-68]:
1e0ca_PU_53-68
CI=1.73


[69-87]:
1e0ca_PU_69-87
CI=0.00


[88-108]:
1e0ca_PU_88-108
CI=0.26


[109-127]:
1e0ca_PU_109-127
CI=0.18


[128-147]:
1e0ca_PU_128-147
CI=0.00


[148-166]:
1e0ca_PU_148-166
CI=0.00


[167-192]:
1e0ca_PU_167-192
CI=1.94


[193-221]:
1e0ca_PU_193-221
CI=0.98


[222-238]:
1e0ca_PU_222-238
CI=0.64


[239-254]:
1e0ca_PU_239-254
CI=0.69


[255-270 ]:
1e0ca_PU_255-270
CI=0.44