Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-127]:
1e19a_PU0_1-127
CI=1.99


[128-164]:
1e19a_PU0_128-164
CI=3.10


[165-313 ]:
1e19a_PU0_165-313
CI=3.80


Level 1
PU
Molecule needs Java 1.4 Structure


[1-127]:
1e19a_PU1_1-127
CI=1.99


[128-164]:
1e19a_PU1_128-164
CI=3.10


[165-227]:
1e19a_PU1_165-227
CI=2.61


[228-313 ]:
1e19a_PU1_228-313
CI=4.10


Level 2
PU
Molecule needs Java 1.4 Structure


[1-51]:
1e19a_PU2_1-51
CI=2.25


[52-87]:
1e19a_PU2_52-87
CI=1.11


[88-127]:
1e19a_PU2_88-127
CI=0.71


[128-164]:
1e19a_PU2_128-164
CI=3.10


[165-227]:
1e19a_PU2_165-227
CI=2.61


[228-313 ]:
1e19a_PU2_228-313
CI=4.10


Level 3
PU
Molecule needs Java 1.4 Structure


[1-51]:
1e19a_PU3_1-51
CI=2.25


[52-87]:
1e19a_PU3_52-87
CI=1.11


[88-111]:
1e19a_PU3_88-111
CI=1.17


[112-127]:
1e19a_PU3_112-127
CI=0.00


[128-164]:
1e19a_PU3_128-164
CI=3.10


[165-227]:
1e19a_PU3_165-227
CI=2.61


[228-313 ]:
1e19a_PU3_228-313
CI=4.10


Level 4
PU
Molecule needs Java 1.4 Structure


[1-51]:
1e19a_PU4_1-51
CI=2.25


[52-87]:
1e19a_PU4_52-87
CI=1.11


[88-111]:
1e19a_PU4_88-111
CI=1.17


[112-127]:
1e19a_PU4_112-127
CI=0.00


[128-164]:
1e19a_PU4_128-164
CI=3.10


[165-227]:
1e19a_PU4_165-227
CI=2.61


[228-259]:
1e19a_PU4_228-259
CI=1.13


[260-279]:
1e19a_PU4_260-279
CI=0.80


[280-313 ]:
1e19a_PU4_280-313
CI=2.39


Level 5
PU
Molecule needs Java 1.4 Structure


[1-51]:
1e19a_PU5_1-51
CI=2.25


[52-87]:
1e19a_PU5_52-87
CI=1.11


[88-111]:
1e19a_PU5_88-111
CI=1.17


[112-127]:
1e19a_PU5_112-127
CI=0.00


[128-164]:
1e19a_PU5_128-164
CI=3.10


[165-185]:
1e19a_PU5_165-185
CI=0.00


[186-218]:
1e19a_PU5_186-218
CI=2.29


[219-227]:
1e19a_PU5_219-227
CI=0.18


[228-259]:
1e19a_PU5_228-259
CI=1.13


[260-279]:
1e19a_PU5_260-279
CI=0.80


[280-313 ]:
1e19a_PU5_280-313
CI=2.39


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1e19a_PU6_1-32
CI=1.06


[33-51]:
1e19a_PU6_33-51
CI=0.28


[52-87]:
1e19a_PU6_52-87
CI=1.11


[88-111]:
1e19a_PU6_88-111
CI=1.17


[112-127]:
1e19a_PU6_112-127
CI=0.00


[128-164]:
1e19a_PU6_128-164
CI=3.10


[165-185]:
1e19a_PU6_165-185
CI=0.00


[186-218]:
1e19a_PU6_186-218
CI=2.29


[219-227]:
1e19a_PU6_219-227
CI=0.18


[228-259]:
1e19a_PU6_228-259
CI=1.13


[260-279]:
1e19a_PU6_260-279
CI=0.80


[280-313 ]:
1e19a_PU6_280-313
CI=2.39


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1e19a_PU7_1-32
CI=1.06


[33-51]:
1e19a_PU7_33-51
CI=0.28


[52-71]:
1e19a_PU7_52-71
CI=0.00


[72-87]:
1e19a_PU7_72-87
CI=0.00


[88-111]:
1e19a_PU7_88-111
CI=1.17


[112-127]:
1e19a_PU7_112-127
CI=0.00


[128-164]:
1e19a_PU7_128-164
CI=3.10


[165-185]:
1e19a_PU7_165-185
CI=0.00


[186-218]:
1e19a_PU7_186-218
CI=2.29


[219-227]:
1e19a_PU7_219-227
CI=0.18


[228-259]:
1e19a_PU7_228-259
CI=1.13


[260-279]:
1e19a_PU7_260-279
CI=0.80


[280-313 ]:
1e19a_PU7_280-313
CI=2.39


Level 8
PU
Molecule needs Java 1.4 Structure


[1-32]:
1e19a_PU8_1-32
CI=1.06


[33-51]:
1e19a_PU8_33-51
CI=0.28


[52-71]:
1e19a_PU8_52-71
CI=0.00


[72-87]:
1e19a_PU8_72-87
CI=0.00


[88-111]:
1e19a_PU8_88-111
CI=1.17


[112-127]:
1e19a_PU8_112-127
CI=0.00


[128-164]:
1e19a_PU8_128-164
CI=3.10


[165-185]:
1e19a_PU8_165-185
CI=0.00


[186-218]:
1e19a_PU8_186-218
CI=2.29


[219-227]:
1e19a_PU8_219-227
CI=0.18


[228-259]:
1e19a_PU8_228-259
CI=1.13


[260-279]:
1e19a_PU8_260-279
CI=0.80


[280-296]:
1e19a_PU8_280-296
CI=0.97


[297-313 ]:
1e19a_PU8_297-313
CI=0.42


Level 9
PU
Molecule needs Java 1.4 Structure


[1-32]:
1e19a_PU9_1-32
CI=1.06


[33-51]:
1e19a_PU9_33-51
CI=0.28


[52-71]:
1e19a_PU9_52-71
CI=0.00


[72-87]:
1e19a_PU9_72-87
CI=0.00


[88-111]:
1e19a_PU9_88-111
CI=1.17


[112-127]:
1e19a_PU9_112-127
CI=0.00


[128-148]:
1e19a_PU9_128-148
CI=0.00


[149-164]:
1e19a_PU9_149-164
CI=1.96


[165-185]:
1e19a_PU9_165-185
CI=0.00


[186-218]:
1e19a_PU9_186-218
CI=2.29


[219-227]:
1e19a_PU9_219-227
CI=0.18


[228-259]:
1e19a_PU9_228-259
CI=1.13


[260-279]:
1e19a_PU9_260-279
CI=0.80


[280-296]:
1e19a_PU9_280-296
CI=0.97


[297-313 ]:
1e19a_PU9_297-313
CI=0.42


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-32]:
1e19a_PU_1-32
CI=1.06


[33-51]:
1e19a_PU_33-51
CI=0.28


[52-71]:
1e19a_PU_52-71
CI=0.00


[72-87]:
1e19a_PU_72-87
CI=0.00


[88-111]:
1e19a_PU_88-111
CI=1.17


[112-127]:
1e19a_PU_112-127
CI=0.00


[128-148]:
1e19a_PU_128-148
CI=0.00


[149-164]:
1e19a_PU_149-164
CI=1.96


[165-185]:
1e19a_PU_165-185
CI=0.00


[186-202]:
1e19a_PU_186-202
CI=0.00


[203-218]:
1e19a_PU_203-218
CI=0.00


[219-227]:
1e19a_PU_219-227
CI=0.18


[228-259]:
1e19a_PU_228-259
CI=1.13


[260-279]:
1e19a_PU_260-279
CI=0.80


[280-296]:
1e19a_PU_280-296
CI=0.97


[297-313 ]:
1e19a_PU_297-313
CI=0.42