Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU0_1-17
CI=0.00


[18-170]:
1e1aa_PU0_18-170
CI=6.11


[171-312 ]:
1e1aa_PU0_171-312
CI=5.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU1_1-17
CI=0.00


[18-170]:
1e1aa_PU1_18-170
CI=6.11


[171-217]:
1e1aa_PU1_171-217
CI=4.18


[218-312 ]:
1e1aa_PU1_218-312
CI=4.83


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU2_1-17
CI=0.00


[18-104]:
1e1aa_PU2_18-104
CI=5.55


[105-170]:
1e1aa_PU2_105-170
CI=4.55


[171-217]:
1e1aa_PU2_171-217
CI=4.18


[218-312 ]:
1e1aa_PU2_218-312
CI=4.83


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU3_1-17
CI=0.00


[18-104]:
1e1aa_PU3_18-104
CI=5.55


[105-170]:
1e1aa_PU3_105-170
CI=4.55


[171-217]:
1e1aa_PU3_171-217
CI=4.18


[218-262]:
1e1aa_PU3_218-262
CI=3.77


[263-312 ]:
1e1aa_PU3_263-312
CI=3.24


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU4_1-17
CI=0.00


[18-104]:
1e1aa_PU4_18-104
CI=5.55


[105-170]:
1e1aa_PU4_105-170
CI=4.55


[171-217]:
1e1aa_PU4_171-217
CI=4.18


[218-262]:
1e1aa_PU4_218-262
CI=3.77


[263-296]:
1e1aa_PU4_263-296
CI=3.39


[297-312 ]:
1e1aa_PU4_297-312
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU5_1-17
CI=0.00


[18-34]:
1e1aa_PU5_18-34
CI=2.41


[35-69]:
1e1aa_PU5_35-69
CI=2.78


[70-104]:
1e1aa_PU5_70-104
CI=3.56


[105-170]:
1e1aa_PU5_105-170
CI=4.55


[171-217]:
1e1aa_PU5_171-217
CI=4.18


[218-262]:
1e1aa_PU5_218-262
CI=3.77


[263-296]:
1e1aa_PU5_263-296
CI=3.39


[297-312 ]:
1e1aa_PU5_297-312
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU6_1-17
CI=0.00


[18-34]:
1e1aa_PU6_18-34
CI=2.41


[35-69]:
1e1aa_PU6_35-69
CI=2.78


[70-104]:
1e1aa_PU6_70-104
CI=3.56


[105-170]:
1e1aa_PU6_105-170
CI=4.55


[171-195]:
1e1aa_PU6_171-195
CI=3.03


[196-217]:
1e1aa_PU6_196-217
CI=2.91


[218-262]:
1e1aa_PU6_218-262
CI=3.77


[263-296]:
1e1aa_PU6_263-296
CI=3.39


[297-312 ]:
1e1aa_PU6_297-312
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU7_1-17
CI=0.00


[18-34]:
1e1aa_PU7_18-34
CI=2.41


[35-69]:
1e1aa_PU7_35-69
CI=2.78


[70-104]:
1e1aa_PU7_70-104
CI=3.56


[105-170]:
1e1aa_PU7_105-170
CI=4.55


[171-195]:
1e1aa_PU7_171-195
CI=3.03


[196-217]:
1e1aa_PU7_196-217
CI=2.91


[218-244]:
1e1aa_PU7_218-244
CI=2.54


[245-262]:
1e1aa_PU7_245-262
CI=2.29


[263-296]:
1e1aa_PU7_263-296
CI=3.39


[297-312 ]:
1e1aa_PU7_297-312
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU8_1-17
CI=0.00


[18-34]:
1e1aa_PU8_18-34
CI=2.41


[35-69]:
1e1aa_PU8_35-69
CI=2.78


[70-104]:
1e1aa_PU8_70-104
CI=3.56


[105-144]:
1e1aa_PU8_105-144
CI=2.97


[145-170]:
1e1aa_PU8_145-170
CI=3.00


[171-195]:
1e1aa_PU8_171-195
CI=3.03


[196-217]:
1e1aa_PU8_196-217
CI=2.91


[218-244]:
1e1aa_PU8_218-244
CI=2.54


[245-262]:
1e1aa_PU8_245-262
CI=2.29


[263-296]:
1e1aa_PU8_263-296
CI=3.39


[297-312 ]:
1e1aa_PU8_297-312
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU9_1-17
CI=0.00


[18-34]:
1e1aa_PU9_18-34
CI=2.41


[35-69]:
1e1aa_PU9_35-69
CI=2.78


[70-88]:
1e1aa_PU9_70-88
CI=2.58


[89-104]:
1e1aa_PU9_89-104
CI=1.74


[105-144]:
1e1aa_PU9_105-144
CI=2.97


[145-170]:
1e1aa_PU9_145-170
CI=3.00


[171-195]:
1e1aa_PU9_171-195
CI=3.03


[196-217]:
1e1aa_PU9_196-217
CI=2.91


[218-244]:
1e1aa_PU9_218-244
CI=2.54


[245-262]:
1e1aa_PU9_245-262
CI=2.29


[263-296]:
1e1aa_PU9_263-296
CI=3.39


[297-312 ]:
1e1aa_PU9_297-312
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU10_1-17
CI=0.00


[18-34]:
1e1aa_PU10_18-34
CI=2.41


[35-69]:
1e1aa_PU10_35-69
CI=2.78


[70-88]:
1e1aa_PU10_70-88
CI=2.58


[89-104]:
1e1aa_PU10_89-104
CI=1.74


[105-121]:
1e1aa_PU10_105-121
CI=0.97


[122-144]:
1e1aa_PU10_122-144
CI=1.15


[145-170]:
1e1aa_PU10_145-170
CI=3.00


[171-195]:
1e1aa_PU10_171-195
CI=3.03


[196-217]:
1e1aa_PU10_196-217
CI=2.91


[218-244]:
1e1aa_PU10_218-244
CI=2.54


[245-262]:
1e1aa_PU10_245-262
CI=2.29


[263-296]:
1e1aa_PU10_263-296
CI=3.39


[297-312 ]:
1e1aa_PU10_297-312
CI=0.00


Final level 11

PU
Molecule needs Java 1.4 Structure


[1-17]:
1e1aa_PU_1-17
CI=0.00


[18-34]:
1e1aa_PU_18-34
CI=2.41


[35-53]:
1e1aa_PU_35-53
CI=0.88


[54-69]:
1e1aa_PU_54-69
CI=0.58


[70-88]:
1e1aa_PU_70-88
CI=2.58


[89-104]:
1e1aa_PU_89-104
CI=1.74


[105-121]:
1e1aa_PU_105-121
CI=0.97


[122-144]:
1e1aa_PU_122-144
CI=1.15


[145-170]:
1e1aa_PU_145-170
CI=3.00


[171-195]:
1e1aa_PU_171-195
CI=3.03


[196-217]:
1e1aa_PU_196-217
CI=2.91


[218-244]:
1e1aa_PU_218-244
CI=2.54


[245-262]:
1e1aa_PU_245-262
CI=2.29


[263-296]:
1e1aa_PU_263-296
CI=3.39


[297-312 ]:
1e1aa_PU_297-312
CI=0.00