Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-77]:
1e29a_PU0_1-77
CI=1.98


[78-107]:
1e29a_PU0_78-107
CI=2.39


[108-135 ]:
1e29a_PU0_108-135
CI=0.20


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1e29a_PU1_1-29
CI=1.50


[30-67]:
1e29a_PU1_30-67
CI=1.85


[68-77]:
1e29a_PU1_68-77
CI=0.00


[78-107]:
1e29a_PU1_78-107
CI=2.39


[108-135 ]:
1e29a_PU1_108-135
CI=0.20


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-29]:
1e29a_PU_1-29
CI=1.50


[30-48]:
1e29a_PU_30-48
CI=0.66


[49-67]:
1e29a_PU_49-67
CI=1.76


[68-77]:
1e29a_PU_68-77
CI=0.00


[78-107]:
1e29a_PU_78-107
CI=2.39


[108-135 ]:
1e29a_PU_108-135
CI=0.20