Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1e30a_PU0_1-16
CI=0.00


[17-75]:
1e30a_PU0_17-75
CI=4.80


[76-153 ]:
1e30a_PU0_76-153
CI=4.48


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1e30a_PU1_1-16
CI=0.00


[17-75]:
1e30a_PU1_17-75
CI=4.80


[76-109]:
1e30a_PU1_76-109
CI=2.12


[110-126]:
1e30a_PU1_110-126
CI=0.74


[127-153 ]:
1e30a_PU1_127-153
CI=2.67


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1e30a_PU2_1-16
CI=0.00


[17-33]:
1e30a_PU2_17-33
CI=0.99


[34-59]:
1e30a_PU2_34-59
CI=2.04


[60-75]:
1e30a_PU2_60-75
CI=0.12


[76-109]:
1e30a_PU2_76-109
CI=2.12


[110-126]:
1e30a_PU2_110-126
CI=0.74


[127-153 ]:
1e30a_PU2_127-153
CI=2.67


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1e30a_PU_1-16
CI=0.00


[17-33]:
1e30a_PU_17-33
CI=0.99


[34-59]:
1e30a_PU_34-59
CI=2.04


[60-75]:
1e30a_PU_60-75
CI=0.12


[76-92]:
1e30a_PU_76-92
CI=0.32


[93-109]:
1e30a_PU_93-109
CI=0.00


[110-126]:
1e30a_PU_110-126
CI=0.74


[127-153 ]:
1e30a_PU_127-153
CI=2.67