Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-161]:
1e6ua_PU0_1-161
CI=3.73


[162-315 ]:
1e6ua_PU0_162-315
CI=3.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-109]:
1e6ua_PU1_1-109
CI=2.85


[110-128]:
1e6ua_PU1_110-128
CI=1.95


[129-161]:
1e6ua_PU1_129-161
CI=1.19


[162-315 ]:
1e6ua_PU1_162-315
CI=3.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-63]:
1e6ua_PU2_1-63
CI=2.72


[64-83]:
1e6ua_PU2_64-83
CI=1.19


[84-109]:
1e6ua_PU2_84-109
CI=0.28


[110-128]:
1e6ua_PU2_110-128
CI=1.95


[129-161]:
1e6ua_PU2_129-161
CI=1.19


[162-315 ]:
1e6ua_PU2_162-315
CI=3.33


Level 3
PU
Molecule needs Java 1.4 Structure


[1-63]:
1e6ua_PU3_1-63
CI=2.72


[64-83]:
1e6ua_PU3_64-83
CI=1.19


[84-109]:
1e6ua_PU3_84-109
CI=0.28


[110-128]:
1e6ua_PU3_110-128
CI=1.95


[129-161]:
1e6ua_PU3_129-161
CI=1.19


[162-224]:
1e6ua_PU3_162-224
CI=1.74


[225-240]:
1e6ua_PU3_225-240
CI=0.34


[241-315 ]:
1e6ua_PU3_241-315
CI=1.07


Level 4
PU
Molecule needs Java 1.4 Structure


[1-63]:
1e6ua_PU4_1-63
CI=2.72


[64-83]:
1e6ua_PU4_64-83
CI=1.19


[84-109]:
1e6ua_PU4_84-109
CI=0.28


[110-128]:
1e6ua_PU4_110-128
CI=1.95


[129-161]:
1e6ua_PU4_129-161
CI=1.19


[162-224]:
1e6ua_PU4_162-224
CI=1.74


[225-240]:
1e6ua_PU4_225-240
CI=0.34


[241-296]:
1e6ua_PU4_241-296
CI=1.12


[297-315 ]:
1e6ua_PU4_297-315
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-63]:
1e6ua_PU5_1-63
CI=2.72


[64-83]:
1e6ua_PU5_64-83
CI=1.19


[84-109]:
1e6ua_PU5_84-109
CI=0.28


[110-128]:
1e6ua_PU5_110-128
CI=1.95


[129-161]:
1e6ua_PU5_129-161
CI=1.19


[162-183]:
1e6ua_PU5_162-183
CI=1.52


[184-207]:
1e6ua_PU5_184-207
CI=0.39


[208-224]:
1e6ua_PU5_208-224
CI=0.00


[225-240]:
1e6ua_PU5_225-240
CI=0.34


[241-296]:
1e6ua_PU5_241-296
CI=1.12


[297-315 ]:
1e6ua_PU5_297-315
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-63]:
1e6ua_PU6_1-63
CI=2.72


[64-83]:
1e6ua_PU6_64-83
CI=1.19


[84-109]:
1e6ua_PU6_84-109
CI=0.28


[110-128]:
1e6ua_PU6_110-128
CI=1.95


[129-145]:
1e6ua_PU6_129-145
CI=0.00


[146-161]:
1e6ua_PU6_146-161
CI=1.82


[162-183]:
1e6ua_PU6_162-183
CI=1.52


[184-207]:
1e6ua_PU6_184-207
CI=0.39


[208-224]:
1e6ua_PU6_208-224
CI=0.00


[225-240]:
1e6ua_PU6_225-240
CI=0.34


[241-296]:
1e6ua_PU6_241-296
CI=1.12


[297-315 ]:
1e6ua_PU6_297-315
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-63]:
1e6ua_PU7_1-63
CI=2.72


[64-83]:
1e6ua_PU7_64-83
CI=1.19


[84-109]:
1e6ua_PU7_84-109
CI=0.28


[110-128]:
1e6ua_PU7_110-128
CI=1.95


[129-145]:
1e6ua_PU7_129-145
CI=0.00


[146-161]:
1e6ua_PU7_146-161
CI=1.82


[162-183]:
1e6ua_PU7_162-183
CI=1.52


[184-207]:
1e6ua_PU7_184-207
CI=0.39


[208-224]:
1e6ua_PU7_208-224
CI=0.00


[225-240]:
1e6ua_PU7_225-240
CI=0.34


[241-271]:
1e6ua_PU7_241-271
CI=0.30


[272-296]:
1e6ua_PU7_272-296
CI=0.07


[297-315 ]:
1e6ua_PU7_297-315
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-32]:
1e6ua_PU_1-32
CI=2.07


[33-63]:
1e6ua_PU_33-63
CI=0.30


[64-83]:
1e6ua_PU_64-83
CI=1.19


[84-109]:
1e6ua_PU_84-109
CI=0.28


[110-128]:
1e6ua_PU_110-128
CI=1.95


[129-145]:
1e6ua_PU_129-145
CI=0.00


[146-161]:
1e6ua_PU_146-161
CI=1.82


[162-183]:
1e6ua_PU_162-183
CI=1.52


[184-207]:
1e6ua_PU_184-207
CI=0.39


[208-224]:
1e6ua_PU_208-224
CI=0.00


[225-240]:
1e6ua_PU_225-240
CI=0.34


[241-271]:
1e6ua_PU_241-271
CI=0.30


[272-296]:
1e6ua_PU_272-296
CI=0.07


[297-315 ]:
1e6ua_PU_297-315
CI=0.00