Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-207]:
1e7wa_PU0_1-207
CI=4.03


[208-230]:
1e7wa_PU0_208-230
CI=0.99


[231-267 ]:
1e7wa_PU0_231-267
CI=0.50


Level 1
PU
Molecule needs Java 1.4 Structure


[1-59]:
1e7wa_PU1_1-59
CI=3.69


[60-207]:
1e7wa_PU1_60-207
CI=3.38


[208-230]:
1e7wa_PU1_208-230
CI=0.99


[231-267 ]:
1e7wa_PU1_231-267
CI=0.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-59]:
1e7wa_PU2_1-59
CI=3.69


[60-95]:
1e7wa_PU2_60-95
CI=1.32


[96-207]:
1e7wa_PU2_96-207
CI=3.22


[208-230]:
1e7wa_PU2_208-230
CI=0.99


[231-267 ]:
1e7wa_PU2_231-267
CI=0.50


Level 3
PU
Molecule needs Java 1.4 Structure


[1-59]:
1e7wa_PU3_1-59
CI=3.69


[60-78]:
1e7wa_PU3_60-78
CI=1.67


[79-95]:
1e7wa_PU3_79-95
CI=0.43


[96-207]:
1e7wa_PU3_96-207
CI=3.22


[208-230]:
1e7wa_PU3_208-230
CI=0.99


[231-267 ]:
1e7wa_PU3_231-267
CI=0.50


Level 4
PU
Molecule needs Java 1.4 Structure


[1-59]:
1e7wa_PU4_1-59
CI=3.69


[60-78]:
1e7wa_PU4_60-78
CI=1.67


[79-95]:
1e7wa_PU4_79-95
CI=0.43


[96-134]:
1e7wa_PU4_96-134
CI=1.40


[135-151]:
1e7wa_PU4_135-151
CI=0.11


[152-207]:
1e7wa_PU4_152-207
CI=2.39


[208-230]:
1e7wa_PU4_208-230
CI=0.99


[231-267 ]:
1e7wa_PU4_231-267
CI=0.50


Level 5
PU
Molecule needs Java 1.4 Structure


[1-59]:
1e7wa_PU5_1-59
CI=3.69


[60-78]:
1e7wa_PU5_60-78
CI=1.67


[79-95]:
1e7wa_PU5_79-95
CI=0.43


[96-134]:
1e7wa_PU5_96-134
CI=1.40


[135-151]:
1e7wa_PU5_135-151
CI=0.11


[152-207]:
1e7wa_PU5_152-207
CI=2.39


[208-230]:
1e7wa_PU5_208-230
CI=0.99


[231-251]:
1e7wa_PU5_231-251
CI=0.26


[252-267 ]:
1e7wa_PU5_252-267
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-32]:
1e7wa_PU6_1-32
CI=3.09


[33-59]:
1e7wa_PU6_33-59
CI=1.05


[60-78]:
1e7wa_PU6_60-78
CI=1.67


[79-95]:
1e7wa_PU6_79-95
CI=0.43


[96-134]:
1e7wa_PU6_96-134
CI=1.40


[135-151]:
1e7wa_PU6_135-151
CI=0.11


[152-207]:
1e7wa_PU6_152-207
CI=2.39


[208-230]:
1e7wa_PU6_208-230
CI=0.99


[231-251]:
1e7wa_PU6_231-251
CI=0.26


[252-267 ]:
1e7wa_PU6_252-267
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-32]:
1e7wa_PU7_1-32
CI=3.09


[33-59]:
1e7wa_PU7_33-59
CI=1.05


[60-78]:
1e7wa_PU7_60-78
CI=1.67


[79-95]:
1e7wa_PU7_79-95
CI=0.43


[96-134]:
1e7wa_PU7_96-134
CI=1.40


[135-151]:
1e7wa_PU7_135-151
CI=0.11


[152-181]:
1e7wa_PU7_152-181
CI=0.63


[182-207]:
1e7wa_PU7_182-207
CI=1.07


[208-230]:
1e7wa_PU7_208-230
CI=0.99


[231-251]:
1e7wa_PU7_231-251
CI=0.26


[252-267 ]:
1e7wa_PU7_252-267
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-32]:
1e7wa_PU_1-32
CI=3.09


[33-59]:
1e7wa_PU_33-59
CI=1.05


[60-78]:
1e7wa_PU_60-78
CI=1.67


[79-95]:
1e7wa_PU_79-95
CI=0.43


[96-118]:
1e7wa_PU_96-118
CI=0.23


[119-134]:
1e7wa_PU_119-134
CI=0.22


[135-151]:
1e7wa_PU_135-151
CI=0.11


[152-181]:
1e7wa_PU_152-181
CI=0.63


[182-207]:
1e7wa_PU_182-207
CI=1.07


[208-230]:
1e7wa_PU_208-230
CI=0.99


[231-251]:
1e7wa_PU_231-251
CI=0.26


[252-267 ]:
1e7wa_PU_252-267
CI=0.00