Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1e85a_PU0_1-65
CI=1.73


[66-124 ]:
1e85a_PU0_66-124
CI=1.63


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1e85a_PU1_1-16
CI=0.12


[17-52]:
1e85a_PU1_17-52
CI=1.20


[53-65]:
1e85a_PU1_53-65
CI=0.00


[66-124 ]:
1e85a_PU1_66-124
CI=1.63


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1e85a_PU2_1-16
CI=0.12


[17-52]:
1e85a_PU2_17-52
CI=1.20


[53-65]:
1e85a_PU2_53-65
CI=0.00


[66-83]:
1e85a_PU2_66-83
CI=0.21


[84-116]:
1e85a_PU2_84-116
CI=1.72


[117-124 ]:
1e85a_PU2_117-124
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-16]:
1e85a_PU3_1-16
CI=0.12


[17-35]:
1e85a_PU3_17-35
CI=0.30


[36-52]:
1e85a_PU3_36-52
CI=0.00


[53-65]:
1e85a_PU3_53-65
CI=0.00


[66-83]:
1e85a_PU3_66-83
CI=0.21


[84-116]:
1e85a_PU3_84-116
CI=1.72


[117-124 ]:
1e85a_PU3_117-124
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-16]:
1e85a_PU_1-16
CI=0.12


[17-35]:
1e85a_PU_17-35
CI=0.30


[36-52]:
1e85a_PU_36-52
CI=0.00


[53-65]:
1e85a_PU_53-65
CI=0.00


[66-83]:
1e85a_PU_66-83
CI=0.21


[84-100]:
1e85a_PU_84-100
CI=0.10


[101-116]:
1e85a_PU_101-116
CI=0.00


[117-124 ]:
1e85a_PU_117-124
CI=0.00