Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-36]:
1eaja_PU0_1-36
CI=1.85


[37-91]:
1eaja_PU0_37-91
CI=3.28


[92-124 ]:
1eaja_PU0_92-124
CI=2.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-36]:
1eaja_PU1_1-36
CI=1.85


[37-74]:
1eaja_PU1_37-74
CI=3.16


[75-91]:
1eaja_PU1_75-91
CI=1.97


[92-124 ]:
1eaja_PU1_92-124
CI=2.36


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1eaja_PU2_1-20
CI=0.00


[21-36]:
1eaja_PU2_21-36
CI=0.00


[37-74]:
1eaja_PU2_37-74
CI=3.16


[75-91]:
1eaja_PU2_75-91
CI=1.97


[92-124 ]:
1eaja_PU2_92-124
CI=2.36


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1eaja_PU_1-20
CI=0.00


[21-36]:
1eaja_PU_21-36
CI=0.00


[37-74]:
1eaja_PU_37-74
CI=3.16


[75-91]:
1eaja_PU_75-91
CI=1.97


[92-108]:
1eaja_PU_92-108
CI=0.00


[109-124 ]:
1eaja_PU_109-124
CI=0.00