Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-74]:
1eara_PU0_1-74
CI=4.67


[75-134]:
1eara_PU0_75-134
CI=3.37


[135-142 ]:
1eara_PU0_135-142
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-25]:
1eara_PU1_1-25
CI=0.08


[26-55]:
1eara_PU1_26-55
CI=2.13


[56-74]:
1eara_PU1_56-74
CI=2.47


[75-134]:
1eara_PU1_75-134
CI=3.37


[135-142 ]:
1eara_PU1_135-142
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-25]:
1eara_PU_1-25
CI=0.08


[26-55]:
1eara_PU_26-55
CI=2.13


[56-74]:
1eara_PU_56-74
CI=2.47


[75-92]:
1eara_PU_75-92
CI=0.50


[93-112]:
1eara_PU_93-112
CI=1.30


[113-134]:
1eara_PU_113-134
CI=0.42


[135-142 ]:
1eara_PU_135-142
CI=0.00