Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1eaza_PU0_1-50
CI=3.79


[51-93]:
1eaza_PU0_51-93
CI=3.35


[94-103 ]:
1eaza_PU0_94-103
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1eaza_PU1_1-28
CI=3.20


[29-50]:
1eaza_PU1_29-50
CI=2.48


[51-93]:
1eaza_PU1_51-93
CI=3.35


[94-103 ]:
1eaza_PU1_94-103
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-28]:
1eaza_PU_1-28
CI=3.20


[29-50]:
1eaza_PU_29-50
CI=2.48


[51-75]:
1eaza_PU_51-75
CI=2.57


[76-93]:
1eaza_PU_76-93
CI=0.21


[94-103 ]:
1eaza_PU_94-103
CI=0.00