Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1eb6a_PU0_1-27
CI=0.07


[28-57]:
1eb6a_PU0_28-57
CI=1.33


[58-177 ]:
1eb6a_PU0_58-177
CI=3.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1eb6a_PU1_1-27
CI=0.07


[28-57]:
1eb6a_PU1_28-57
CI=1.33


[58-73]:
1eb6a_PU1_58-73
CI=0.34


[74-109]:
1eb6a_PU1_74-109
CI=2.86


[110-177 ]:
1eb6a_PU1_110-177
CI=3.50


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1eb6a_PU2_1-27
CI=0.07


[28-57]:
1eb6a_PU2_28-57
CI=1.33


[58-73]:
1eb6a_PU2_58-73
CI=0.34


[74-109]:
1eb6a_PU2_74-109
CI=2.86


[110-125]:
1eb6a_PU2_110-125
CI=2.31


[126-169]:
1eb6a_PU2_126-169
CI=3.42


[170-177 ]:
1eb6a_PU2_170-177
CI=0.20


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1eb6a_PU_1-27
CI=0.07


[28-57]:
1eb6a_PU_28-57
CI=1.33


[58-73]:
1eb6a_PU_58-73
CI=0.34


[74-109]:
1eb6a_PU_74-109
CI=2.86


[110-125]:
1eb6a_PU_110-125
CI=2.31


[126-142]:
1eb6a_PU_126-142
CI=1.53


[143-169]:
1eb6a_PU_143-169
CI=2.44


[170-177 ]:
1eb6a_PU_170-177
CI=0.20