Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eca0_PU0_1-18
CI=0.00


[19-64]:
1eca0_PU0_19-64
CI=1.36


[65-136 ]:
1eca0_PU0_65-136
CI=0.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eca0_PU1_1-18
CI=0.00


[19-64]:
1eca0_PU1_19-64
CI=1.36


[65-92]:
1eca0_PU1_65-92
CI=0.26


[93-126]:
1eca0_PU1_93-126
CI=0.16


[127-136 ]:
1eca0_PU1_127-136
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eca0_PU2_1-18
CI=0.00


[19-64]:
1eca0_PU2_19-64
CI=1.36


[65-92]:
1eca0_PU2_65-92
CI=0.26


[93-110]:
1eca0_PU2_93-110
CI=0.10


[111-126]:
1eca0_PU2_111-126
CI=0.00


[127-136 ]:
1eca0_PU2_127-136
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-18]:
1eca0_PU_1-18
CI=0.00


[19-44]:
1eca0_PU_19-44
CI=0.65


[45-64]:
1eca0_PU_45-64
CI=0.18


[65-92]:
1eca0_PU_65-92
CI=0.26


[93-110]:
1eca0_PU_93-110
CI=0.10


[111-126]:
1eca0_PU_111-126
CI=0.00


[127-136 ]:
1eca0_PU_127-136
CI=0.00