Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1eerb_PU0_1-17
CI=0.33


[18-156]:
1eerb_PU0_18-156
CI=2.90


[157-166 ]:
1eerb_PU0_157-166
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1eerb_PU1_1-17
CI=0.33


[18-54]:
1eerb_PU1_18-54
CI=0.05


[55-126]:
1eerb_PU1_55-126
CI=1.49


[127-156]:
1eerb_PU1_127-156
CI=0.24


[157-166 ]:
1eerb_PU1_157-166
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1eerb_PU_1-17
CI=0.33


[18-54]:
1eerb_PU_18-54
CI=0.05


[55-71]:
1eerb_PU_55-71
CI=0.00


[72-101]:
1eerb_PU_72-101
CI=0.50


[102-126]:
1eerb_PU_102-126
CI=0.15


[127-156]:
1eerb_PU_127-156
CI=0.24


[157-166 ]:
1eerb_PU_157-166
CI=0.00