Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-216]:
1ef8a_PU0_1-216
CI=3.94


[217-256 ]:
1ef8a_PU0_217-256
CI=0.95


Level 1
PU
Molecule needs Java 1.4 Structure


[1-216]:
1ef8a_PU1_1-216
CI=3.94


[217-234]:
1ef8a_PU1_217-234
CI=0.00


[235-256 ]:
1ef8a_PU1_235-256
CI=1.52


Level 2
PU
Molecule needs Java 1.4 Structure


[1-195]:
1ef8a_PU2_1-195
CI=4.19


[196-216]:
1ef8a_PU2_196-216
CI=0.00


[217-234]:
1ef8a_PU2_217-234
CI=0.00


[235-256 ]:
1ef8a_PU2_235-256
CI=1.52


Level 3
PU
Molecule needs Java 1.4 Structure


[1-122]:
1ef8a_PU3_1-122
CI=4.33


[123-173]:
1ef8a_PU3_123-173
CI=1.73


[174-195]:
1ef8a_PU3_174-195
CI=0.17


[196-216]:
1ef8a_PU3_196-216
CI=0.00


[217-234]:
1ef8a_PU3_217-234
CI=0.00


[235-256 ]:
1ef8a_PU3_235-256
CI=1.52


Level 4
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ef8a_PU4_1-56
CI=2.88


[57-122]:
1ef8a_PU4_57-122
CI=3.27


[123-173]:
1ef8a_PU4_123-173
CI=1.73


[174-195]:
1ef8a_PU4_174-195
CI=0.17


[196-216]:
1ef8a_PU4_196-216
CI=0.00


[217-234]:
1ef8a_PU4_217-234
CI=0.00


[235-256 ]:
1ef8a_PU4_235-256
CI=1.52


Level 5
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ef8a_PU5_1-56
CI=2.88


[57-72]:
1ef8a_PU5_57-72
CI=0.00


[73-93]:
1ef8a_PU5_73-93
CI=0.36


[94-122]:
1ef8a_PU5_94-122
CI=2.43


[123-173]:
1ef8a_PU5_123-173
CI=1.73


[174-195]:
1ef8a_PU5_174-195
CI=0.17


[196-216]:
1ef8a_PU5_196-216
CI=0.00


[217-234]:
1ef8a_PU5_217-234
CI=0.00


[235-256 ]:
1ef8a_PU5_235-256
CI=1.52


Level 6
PU
Molecule needs Java 1.4 Structure


[1-56]:
1ef8a_PU6_1-56
CI=2.88


[57-72]:
1ef8a_PU6_57-72
CI=0.00


[73-93]:
1ef8a_PU6_73-93
CI=0.36


[94-122]:
1ef8a_PU6_94-122
CI=2.43


[123-145]:
1ef8a_PU6_123-145
CI=0.16


[146-173]:
1ef8a_PU6_146-173
CI=0.73


[174-195]:
1ef8a_PU6_174-195
CI=0.17


[196-216]:
1ef8a_PU6_196-216
CI=0.00


[217-234]:
1ef8a_PU6_217-234
CI=0.00


[235-256 ]:
1ef8a_PU6_235-256
CI=1.52


Level 7
PU
Molecule needs Java 1.4 Structure


[1-39]:
1ef8a_PU7_1-39
CI=2.48


[40-56]:
1ef8a_PU7_40-56
CI=0.00


[57-72]:
1ef8a_PU7_57-72
CI=0.00


[73-93]:
1ef8a_PU7_73-93
CI=0.36


[94-122]:
1ef8a_PU7_94-122
CI=2.43


[123-145]:
1ef8a_PU7_123-145
CI=0.16


[146-173]:
1ef8a_PU7_146-173
CI=0.73


[174-195]:
1ef8a_PU7_174-195
CI=0.17


[196-216]:
1ef8a_PU7_196-216
CI=0.00


[217-234]:
1ef8a_PU7_217-234
CI=0.00


[235-256 ]:
1ef8a_PU7_235-256
CI=1.52


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1ef8a_PU_1-20
CI=2.24


[21-39]:
1ef8a_PU_21-39
CI=0.28


[40-56]:
1ef8a_PU_40-56
CI=0.00


[57-72]:
1ef8a_PU_57-72
CI=0.00


[73-93]:
1ef8a_PU_73-93
CI=0.36


[94-122]:
1ef8a_PU_94-122
CI=2.43


[123-145]:
1ef8a_PU_123-145
CI=0.16


[146-173]:
1ef8a_PU_146-173
CI=0.73


[174-195]:
1ef8a_PU_174-195
CI=0.17


[196-216]:
1ef8a_PU_196-216
CI=0.00


[217-234]:
1ef8a_PU_217-234
CI=0.00


[235-256 ]:
1ef8a_PU_235-256
CI=1.52