Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU0_1-18
CI=0.00


[19-250]:
1eg5a_PU0_19-250
CI=4.15


[251-353 ]:
1eg5a_PU0_251-353
CI=2.46


Level 1
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU1_1-18
CI=0.00


[19-42]:
1eg5a_PU1_19-42
CI=1.70


[43-250]:
1eg5a_PU1_43-250
CI=4.28


[251-353 ]:
1eg5a_PU1_251-353
CI=2.46


Level 2
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU2_1-18
CI=0.00


[19-42]:
1eg5a_PU2_19-42
CI=1.70


[43-80]:
1eg5a_PU2_43-80
CI=0.65


[81-167]:
1eg5a_PU2_81-167
CI=3.17


[168-250]:
1eg5a_PU2_168-250
CI=3.05


[251-353 ]:
1eg5a_PU2_251-353
CI=2.46


Level 3
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU3_1-18
CI=0.00


[19-42]:
1eg5a_PU3_19-42
CI=1.70


[43-80]:
1eg5a_PU3_43-80
CI=0.65


[81-167]:
1eg5a_PU3_81-167
CI=3.17


[168-208]:
1eg5a_PU3_168-208
CI=3.17


[209-232]:
1eg5a_PU3_209-232
CI=1.88


[233-250]:
1eg5a_PU3_233-250
CI=0.00


[251-353 ]:
1eg5a_PU3_251-353
CI=2.46


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU4_1-18
CI=0.00


[19-42]:
1eg5a_PU4_19-42
CI=1.70


[43-80]:
1eg5a_PU4_43-80
CI=0.65


[81-167]:
1eg5a_PU4_81-167
CI=3.17


[168-208]:
1eg5a_PU4_168-208
CI=3.17


[209-232]:
1eg5a_PU4_209-232
CI=1.88


[233-250]:
1eg5a_PU4_233-250
CI=0.00


[251-287]:
1eg5a_PU4_251-287
CI=1.19


[288-327]:
1eg5a_PU4_288-327
CI=2.06


[328-353 ]:
1eg5a_PU4_328-353
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU5_1-18
CI=0.00


[19-42]:
1eg5a_PU5_19-42
CI=1.70


[43-80]:
1eg5a_PU5_43-80
CI=0.65


[81-150]:
1eg5a_PU5_81-150
CI=3.06


[151-167]:
1eg5a_PU5_151-167
CI=0.42


[168-208]:
1eg5a_PU5_168-208
CI=3.17


[209-232]:
1eg5a_PU5_209-232
CI=1.88


[233-250]:
1eg5a_PU5_233-250
CI=0.00


[251-287]:
1eg5a_PU5_251-287
CI=1.19


[288-327]:
1eg5a_PU5_288-327
CI=2.06


[328-353 ]:
1eg5a_PU5_328-353
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU6_1-18
CI=0.00


[19-42]:
1eg5a_PU6_19-42
CI=1.70


[43-80]:
1eg5a_PU6_43-80
CI=0.65


[81-150]:
1eg5a_PU6_81-150
CI=3.06


[151-167]:
1eg5a_PU6_151-167
CI=0.42


[168-208]:
1eg5a_PU6_168-208
CI=3.17


[209-232]:
1eg5a_PU6_209-232
CI=1.88


[233-250]:
1eg5a_PU6_233-250
CI=0.00


[251-287]:
1eg5a_PU6_251-287
CI=1.19


[288-310]:
1eg5a_PU6_288-310
CI=0.81


[311-327]:
1eg5a_PU6_311-327
CI=0.22


[328-353 ]:
1eg5a_PU6_328-353
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU7_1-18
CI=0.00


[19-42]:
1eg5a_PU7_19-42
CI=1.70


[43-80]:
1eg5a_PU7_43-80
CI=0.65


[81-112]:
1eg5a_PU7_81-112
CI=1.54


[113-150]:
1eg5a_PU7_113-150
CI=1.50


[151-167]:
1eg5a_PU7_151-167
CI=0.42


[168-208]:
1eg5a_PU7_168-208
CI=3.17


[209-232]:
1eg5a_PU7_209-232
CI=1.88


[233-250]:
1eg5a_PU7_233-250
CI=0.00


[251-287]:
1eg5a_PU7_251-287
CI=1.19


[288-310]:
1eg5a_PU7_288-310
CI=0.81


[311-327]:
1eg5a_PU7_311-327
CI=0.22


[328-353 ]:
1eg5a_PU7_328-353
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-18]:
1eg5a_PU_1-18
CI=0.00


[19-42]:
1eg5a_PU_19-42
CI=1.70


[43-80]:
1eg5a_PU_43-80
CI=0.65


[81-112]:
1eg5a_PU_81-112
CI=1.54


[113-134]:
1eg5a_PU_113-134
CI=0.94


[135-150]:
1eg5a_PU_135-150
CI=1.03


[151-167]:
1eg5a_PU_151-167
CI=0.42


[168-208]:
1eg5a_PU_168-208
CI=3.17


[209-232]:
1eg5a_PU_209-232
CI=1.88


[233-250]:
1eg5a_PU_233-250
CI=0.00


[251-287]:
1eg5a_PU_251-287
CI=1.19


[288-310]:
1eg5a_PU_288-310
CI=0.81


[311-327]:
1eg5a_PU_311-327
CI=0.22


[328-353 ]:
1eg5a_PU_328-353
CI=0.00